Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1220 ATGGAAAGTGAGAGTGAGATGCTGATCCCATGTTTTGATTTTCGCAAAGCATTAGAAGAAGGGAGTGAGGAGTGGAAAACAATGAGCAAGAACGTGAGAGAAGCGTGTGAGAATCATGGTTGCTTTCTCTTCATGTTTGATGAGATCCCAAAGGGTCTACGTGAACAAATGTTCATGGGAATGAGAGCATTGTTTGATCTACCCGAAGAAACCAAGAAAAAGCACACGAGTCCAAAACCTTATAGGAGCTACAATGGCAAGAACCCCATCATTCCTCTTTGTGAAAGCTTTGGTATTGATGATGCTCCTCTACCAGCTATGGCTGAAGCCTTCACTAACCTCATGTGGCCTCAAGGAAACCCATCTTTCAGCGAGACACTGAAGTCTATGAGCTCAAAGATGCTAGAACTAAGCTTCCTCATCCTGAAAATGATTGTGGAGGGTTATGGCCTTCCCCGGCATTACAATTTGGATGTTGGAAACATGAAGGGCTCTAGTGATTCACGGTTGATCAAGTACCAAGTTCCTAAAAGCAACAATGACTCCAAGAATGCCCTGTTGCCTCACACTGACAAAAGTGCTTTAACCATTCTATTCCAAAATGACGTCCAGGGTTTGCAAGTGCTATCCAAAACAGGCAAATGGGTTGGATTAGAGGTACCCCAAGATGGCTTTGTGGTCATTATTGGTGATATACTTAAGGCATGGAGCAATGGGAGGCTTCATGCAGCCACACACAGAGTGGTGATGAGTGGAGAGAAAGAGAGGTACTCGTTTGGGTTTTTTGCAATGCCAAAGGAAGAGGTGAATATTGAGGTGCCCATTGAGTTGGTAGACGACAAAACTCATCCTCTCCGTTATCGTCCATTTAATTATGGAGAGTACTTCCATTACTTTGTTTCAACTCTCAAAGAAAACGCACTTGAAGTGTTTGCTGGGCTTTGA 945 0.437 MESESEMLIPCFDFRKALEEGSEEWKTMSKNVREACENHGCFLFMFDEIPKGLREQMFMGMRALFDLPEETKKKHTSPKPYRSYNGKNPIIPLCESFGIDDAPLPAMAEAFTNLMWPQGNPSFSETLKSMSSKMLELSFLILKMIVEGYGLPRHYNLDVGNMKGSSDSRLIKYQVPKSNNDSKNALLPHTDKSALTILFQNDVQGLQVLSKTGKWVGLEVPQDGFVVIIGDILKAWSNGRLHAATHRVVMSGEKERYSFGFFAMPKEEVNIEVPIELVDDKTHPLRYRPFNYGEYFHYFVSTLKENALEVFAGL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1220 314 Pfam 2OG-Fe(II) oxygenase superfamily 170 264 IPR044861 -
Apr5g1220 314 Gene3D - 8 311 IPR027443 -
Apr5g1220 314 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 165 265 IPR005123 -
Apr5g1220 314 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 86 IPR026992 -
Apr5g1220 314 PRINTS Isopenicillin N synthase signature 189 210 - -
Apr5g1220 314 PRINTS Isopenicillin N synthase signature 225 251 - -
Apr5g1220 314 PRINTS Isopenicillin N synthase signature 291 309 - -
Apr5g1220 314 SUPERFAMILY Clavaminate synthase-like 6 302 - -
Apr5g1220 314 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 313 - -
Apr5g1220 314 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE AOP1-RELATED 4 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1220 Apr-Chr5 16657446 16660037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1220 3 295 Glycosyltransferase AT5G59530 23.934 1.43e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1220 - - gmx:100817159 488.804