Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1213 ATGTCCAACAATCTGGTTTCGGAGCCGATGCCGAGTATGCCAATGGCTCGGTTGCAGCCTGTTTTGAGCAAGGTTGATTCATCGGGGAGACAGATGGAAATGGGGCTCTTGGGTCCTGTAGCTAGTGATCTTGTGTCACAGCCACAGGCGACCTCAAATGTTGGATTACCCCATTCGAGTATGCAAAGTGGGCGGATAGAAGCACAAGCAGGTAATCCAGGAATGCATCAGTTTCTTTTGCCTAACAGACAGTCCGTGCAAATGGGGACTCTTCCGAATAGCACGGGGTCACACCAACAGCCAATGACTCCAAAGCGCAAAGCACCGATGGAATTATCATCTAGTAGTTCCATGACGTCAAGCAAGCGGGCTGCGCAAATGGGAAATAGACCTTGGTTGCAGCAAGTACCTAATGCGTCAAATAGAGGTTCTCCGCAGATGCAATCCCCATCAAATGCCTCCAGGACACAGCACTCGGCAGCTTCTAGTAAGAGAAAAACACAGATGGATAACACTTCCGGTAAATCTGGGACTTCTCGGTCCTTGAATTCCAAAAGTCAGAATACACAGATGAAACAATCCTCCAAGGTTCAAACTGAACCATCTGAAAGTGTTAGGTCCAAGATGAGAGAGTCACTAGCTGCTGCTCTAGCCTTAGTTTCTCAGCAAGGTAAATCTCAGGTCCCTAACAATAACACGTCGAATGATGCTGCCAGTACTCAGAGTAAAGTAAAGAACAGTTCTCAGTGCACTCAGCCAGCATCTGCATCCATTGATACTTCTTTGGAGCAAAAGCAAGATGTTTCTCAATCTGTTAATTCCTCTTTTGCTGCGGGTGAGTCAGTTGACCACGTTGCAGGAGAGCAGAGACAGAGTACATTTAATGAAGATTTTTTGGATAAATGCAAGGATTATGAAGTGGGATCCACTAATGTATCAAACAATGAAAATATACTGAGTTCTATGCAAGCCTTGGACTGTGATAAGCAAGACTTCCAGTCAAGTTACACTTTGACGACTGATGATGTTCCTTTCAGTGACAGTTTCTTTATGAAAGATGAACTTTTGCAGGGAAATGGTCTTTCCTGGGTGTTATCTGATATGGTGGATGTGGGAAATCAAAGGGAAAGTGAAACTAATATAGAGCAGAGGTCAGAACCTCAGGAAACAGGTGGAGTTTGTAGGGAGGAGGTCCCTTTGCATGAACTTTTAGCATCAAGGATAGAAGCAGAACTCTTCAAACTATTTGGAGGTGTGAATAAGAAGTACAAAGAGAAGGGGAGGTCTCTTTTATTCAATTTGAAAGATCGCAATAATCCTGAACTTAGAGAAAGGGTTATGTTTGGTGAAATTCCCCCGGAACAATTATGCTCCATGACTGCCGAGGAACTTGCTTCAAAGGAGCTCTCTCAGTGGCGGATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATATCAGACGTTTGGTCAAGAAAACACATAAAGGTGAGTTTCAAGTGGAAGTTGAACATGAAGACAATCTCTCAGTGGAGGAAGTTTCAGCTGGCACAACCTCAATTGCTCGAAGCCAAACTACAAAAAAGGATGTAGAAAGCACTTCTCCTTCCAAATCAGATGTGATCAAAGGTGATGCGAATACTGATGCTGAGAAGAGCAAGTCAGAGAAGGATAATACATTTTCCATTACCATTTCTTCCAATGATGGTACTGATCCCATGCAAGGGCTTATGACAGATGATGCATTGAAGGACCCTGACTTTCTTCCGCCAATTGTCTCTCTTGATGAATTCATGGAATCCCTTCATTCTGAGCCACCATTTGAAAATTTACCAGTGGAATCTGGAAAAGTGGCACATTCGTCCGACAAGGATGATTCTGGGGCTGGATCTAAATCAAGATCTTCTGCTTTTAGTTTAAGTGCGCAAGCTGATGTCACTCCTGATAAGAAGTCTGAGAAGCTTCAAAGCACATCAGGTTCTGAAGAGGGAAAAAAGTTAAATGCAGAATCTGGGGCCATTTCTTCTAATGCAAGATACAGTGATAGTCAAACTGACGTGAAGCTGACAGATGGTCGTACCAAGGAAAGGTCAACTAATGATGTGAAGTCATCTACTTCCAGTGATGCTGAGTTGAAAGCCAGTCTGTTTCATTTGGAAGAGAGAAATCGCAATAATATGTATTTGAAAGCTACACTCCCCTCTAAGGGTGAATGCCTCTGGGATGGAATGCTTCAACTGAATATCTCTACCACTCATTCAGTCATAAGCATCTTTAAGAGTGGTGAGAAAACTTATGCTAACGACTGGTCTGGCTTTCTCGAGGTCAAGGGAAGGGTTCGACTTGATGCATTCGAGAAATTTCTGCAGGATCTTCGTCTGTCAAGAAGTCGTGCAATCATGGTTTCACATTTTGTTTCCAAAGGGTCATCCCCCGAGGAGGAATCGACTCTCCGTGAGGTGGCTGACTCGTACATTTTGGACGAGAGAGTAGGATTTGCTGAGCCTGCGCACGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTCAGCAACATACTTCCAAAAGAACAAATTGAAGCAGTTAATTCTATCGATAATGGCCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGACTATATCACCCACCACTTCATCACACCACAAACATGGCTCTAAAAGACAACACTTTAGTAGGAGACAGCAAGATATAAATGTGAATGCCAATTCCACCCACAAAGCAGTGCCCTCTACGGGCTTTAAGACCCCCGAGACTGGACCCCCATGTGATGATGATGATGATGATATTCCTCCCGGATTTGGGCCACCGGCGGCCCGAGTTGAGGATGACCTACCGGAGTTCAATTTCTCCGGCAGTTCAAATCCATCACAGTTGGTCCAAAAACCCATGGGACCAGGTATGGTCCCATTACACTCGGTTAACCAAGCCCCGTCACGCCCTGTAGAACAAATGAGGGAACTTGTACACAAATATGGGCAAAACAAACCAAATGTATCTTCAGTTAATTGGCAGGATAAATTTGGGGGAACAATTCAACCCTGGAATGATGATGATGATGATATACCTGAATGGCAGCCCCAAACCTCGCAGAATCAGTTTCCTCCCCAACAACAGACAACGATGCACAACTTTCATCTTCGACCTCACATCTTGAATCAATCATTTGCGGGTTCACCACAGCAGTCGATTATCACAACACAATATCTGCAACCCCCTATGAATGTGACACATGGCCAACGAAATTTTGGCCCCCAGTGGGTTTCTTCTACCCAGGGTAGCAGAAACCTGCGGCCAAGCGGTGTACAACCCCATGGAACTTCTTCGCAAGGCACCACCTGGCCTCAACATGTGTCTAGAAGTAGGGGCTATTAG 3438 0.4444 MSNNLVSEPMPSMPMARLQPVLSKVDSSGRQMEMGLLGPVASDLVSQPQATSNVGLPHSSMQSGRIEAQAGNPGMHQFLLPNRQSVQMGTLPNSTGSHQQPMTPKRKAPMELSSSSSMTSSKRAAQMGNRPWLQQVPNASNRGSPQMQSPSNASRTQHSAASSKRKTQMDNTSGKSGTSRSLNSKSQNTQMKQSSKVQTEPSESVRSKMRESLAAALALVSQQGKSQVPNNNTSNDAASTQSKVKNSSQCTQPASASIDTSLEQKQDVSQSVNSSFAAGESVDHVAGEQRQSTFNEDFLDKCKDYEVGSTNVSNNENILSSMQALDCDKQDFQSSYTLTTDDVPFSDSFFMKDELLQGNGLSWVLSDMVDVGNQRESETNIEQRSEPQETGGVCREEVPLHELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGEIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDIRRLVKKTHKGEFQVEVEHEDNLSVEEVSAGTTSIARSQTTKKDVESTSPSKSDVIKGDANTDAEKSKSEKDNTFSITISSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPVESGKVAHSSDKDDSGAGSKSRSSAFSLSAQADVTPDKKSEKLQSTSGSEEGKKLNAESGAISSNARYSDSQTDVKLTDGRTKERSTNDVKSSTSSDAELKASLFHLEERNRNNMYLKATLPSKGECLWDGMLQLNISTTHSVISIFKSGEKTYANDWSGFLEVKGRVRLDAFEKFLQDLRLSRSRAIMVSHFVSKGSSPEEESTLREVADSYILDERVGFAEPAHGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSTISPTTSSHHKHGSKRQHFSRRQQDINVNANSTHKAVPSTGFKTPETGPPCDDDDDDIPPGFGPPAARVEDDLPEFNFSGSSNPSQLVQKPMGPGMVPLHSVNQAPSRPVEQMRELVHKYGQNKPNVSSVNWQDKFGGTIQPWNDDDDDIPEWQPQTSQNQFPPQQQTTMHNFHLRPHILNQSFAGSPQQSIITTQYLQPPMNVTHGQRNFGPQWVSSTQGSRNLRPSGVQPHGTSSQGTTWPQHVSRSRGY* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1213 1145 MobiDBLite consensus disorder prediction 565 580 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 219 266 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 637 652 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 517 589 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 1099 1145 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 109 202 - -
Apr5g1213 1145 Pfam Transcription factor S-II (TFIIS), central domain 400 480 IPR003618 GO:0006351
Apr5g1213 1145 MobiDBLite consensus disorder prediction 611 713 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 692 708 - -
Apr5g1213 1145 SUPERFAMILY Elongation factor TFIIS domain 2 401 468 IPR036575 GO:0006351
Apr5g1213 1145 MobiDBLite consensus disorder prediction 916 933 - -
Apr5g1213 1145 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 59 1123 - -
Apr5g1213 1145 SMART mid_6 367 475 IPR003618 GO:0006351
Apr5g1213 1145 MobiDBLite consensus disorder prediction 87 266 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 895 946 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 550 564 - -
Apr5g1213 1145 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 59 1123 - -
Apr5g1213 1145 Gene3D - 377 467 IPR036575 GO:0006351
Apr5g1213 1145 ProSiteProfiles TFIIS central domain profile. 370 492 IPR003618 GO:0006351
Apr5g1213 1145 MobiDBLite consensus disorder prediction 518 548 - -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 87 102 - -
Apr5g1213 1145 Pfam SPOC domain 739 886 IPR012921 -
Apr5g1213 1145 MobiDBLite consensus disorder prediction 667 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1213 Apr-Chr5 16594101 16600550 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1213 - - gmx:100808809 1675.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1213 5 16594101 16600550 Apr5g1213 5 16594101 16600550 ECH