Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1193 ATGAGTAGACCAACAACACGAAGTAAAAACAAAAGACAGAGACAAGGGGAAGATGGCATCGGCACTGGTGAAATATGGAGGAAAATTCACAATACAGGTTTGGTAACTGAGGATGATATGAATCAATTATATATGATTTGGAAGCCGGTTTGTTCAGGTTGTCGTCTCAATACCAAAGATAACCCAAATTGCTTCTGTGCATTGGTTCCACCTCCAAATGGAGCCAGGAAGTCTGGCTTGTGGCAAAAGATGTCAGATTTTGTTGAAAGTCTTGGTCATGACCCAACCAAGGATCTTCGTGCTTCTGCCAATTCTCCTGCAGGTCTCACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTCCAGTGCTTGTACATGAATAAATCTTTTCGAGAAGGCATATTTTCTGTAGAACCAGGTGTTTTACAACAACAGCCAGTGCTAGATCAGCTGGCTCGGCTTTTTGTGCAGTTGCATGTTAGTAAAATGGCTTTCATAGACTCTTCTCCATTTGTAAAAACTCTGGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTCTCATTGCTTGAGCGTTGCCTGAGATATTCCCAAGTTCCTAAGGCAAGAACAATAGTTCAAGACCTATTCCGGGGAAGTGTGTCTCATGTGACGACGTGCTCGCAGTGTGGAAAAGCCTCTGAAGCTTCTTCCAAAATGGAAGATTTCTATGAGTTGGAATTAAATGTCAAGGGATTGAAGAGTTTAGATGAGAGTCTAGATGAATATCTCACCGTGGAAGAGCTTCAAGGAGACAATCAATATTTTTGCGAGTCATGTAGAACAAGAGTTGATGCTACACGCAGCATCAAGCTGTGTACATTGCCCAAAGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCAAAGACTACAACAAAGAAGAAAATTACTTCTGCCTTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTTGATTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGAACTGGTGTTAATAGTGGTCATTACATTGCTCACATCAAGGATGTAAACACAGGACAATGGTGGGAATTTGATGACGAGCACGTTACTAATTTGGGTCGTCATCCATTTGGCGAAGCATCTTCATGTTCTACTACTAAATCCATAAAGACTGATGCAATTAATTTTGATTGCTCTGAAGCAAGGATAGCTGACAGTAACAGTAATGGTTTAAATACCACACATTCACAATCCTCACTTGTGGAGACATTTTCTTCTAGCGATGCATACATGTTGATGTACCATCTTAAACATACAAAAAATGCAGCTGAAAGTGGGGGTATAATTTGTGCTAACCATCAGGAAAGAGAGGGTGTTGCAGTTGCTGTGCTAGATGGTGCTCCTCTTCCTTTCCATCTTTATGATGAGATTCAAAATTTCAATGCCTCATATGTTGATGCTTGTCAGCAGTACAATAATAGGAAAGAGTTAGAGTTGAATCGTATTAGTGAAAGGAGACAGGAGGTTCGATCTATTTTAGCTGAAGCTCCTGTTCAACCATTGGAGCAACCATTTTATTGGATTTCTAGTGACTGGCTCCGCCAGTGGGCCGACAACATTATTCCAACTTCTCTTGACAACACATCTATCCAATGCTCACATGGGAAAATTCCAGTTTCAAAGGTTACCTCGATGAAGCGATTGTCTGCTAAAGCATGGGATAAGTTGTTTTCCAAGTATGGTGGGGGCCCAGCACTCTCTCATCATGACCACTGTATGGATTGCTTGATTCATGGGGCTAAGACAGTGGTGTCAGCTGACTCCTACCGGGATAGAAGAGAATCAATGAAGTCACTTGCACGGGATATTCTAGATGGAAACTGTCTTGATGGAAAGTATTACATATCCAGACCGTGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGGCCAACAGCAGCCATTAGTTGTCCACATGGGCAACTTATGCCTGAGCAAGCTCCTGGAGCTAAGCGGGTGCTTATTCCTGAGAGTTTTTGGCTCTTCTTATATGAAGATGCTGTTTCTGTAAACCCTGATGATCCTTTGGGTGGCCCAACTTTTTCTTCAGATTCTGGAGAGTGTTCCCAATGCAGTAATGAATTATCTGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAGGCAACGTCAGAATCATGAGAAATTATTCCAGGCAAAAAATATGCCGCTCTCTCTGCATTGCAAGTATTTCTTGGTGCCTTCTTTGTGGATTTCAAAATGGAGAAATTACATTAGTCCAACCCTGAAGAATTCAGAAAAACCTGAAAGTTTAGATGGGGTAATTAATTCACTTATGTGTGAAAAGCACTCACAACTTGTTGAAAGACCACCCGAATTGGTTTTCAGACGCGGTGCTATAATTCAGAGAGAGTCTTCTGTAGGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGTGGTATTGAGACTGAAGGAATATCTGCAACAATTGATCATGTTAATAATTCTGAGAAAGTTTTGACTGGATCTGGTGAAGAGATGCTAATGGGTGAGGATCAGTTAGGCACGGGGGATAAAATGAATAATGAAAATGGGACTGGACAAATTTTAATTAGGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAGAGAAAGCTGTGAGCTAATGCAGAAACTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGCAAGGAGGTACCTAGATCAATCTTGGAGGCTTCAAAGGGAATCATTGAAACAGATCGACGGGTTTCCAAGCGCTCCCGAAAGACGAAAAATGGGAGTTCAATTAGTCTGAAAGTTTCTGCTTCAACATCTCTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATTCTGCATAAAGGTGATAGGACAATTGATGCTGAAAATGAATGTGCTACCCTTGCGGATGTTAACATATTTGCTGGAGATCAAATTATTGTGAGGGACTCAGAGATTCATGAAAATCGAGATATTGCCGATGAGCTTTGCAATGATAAAATGGATCTGCAGCATACTGAGGAAGGGTTCCGTGGAACACTTCTCACAGCAAATGTTTCATCCCAGGTCGTTTAA 3249 0.4121 MSRPTTRSKNKRQRQGEDGIGTGEIWRKIHNTGLVTEDDMNQLYMIWKPVCSGCRLNTKDNPNCFCALVPPPNGARKSGLWQKMSDFVESLGHDPTKDLRASANSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPGVLQQQPVLDQLARLFVQLHVSKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLRYSQVPKARTIVQDLFRGSVSHVTTCSQCGKASEASSKMEDFYELELNVKGLKSLDESLDEYLTVEELQGDNQYFCESCRTRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKITSAFSFPAELDMRHRMSELSQFDLVYDLSAVLIHKGTGVNSGHYIAHIKDVNTGQWWEFDDEHVTNLGRHPFGEASSCSTTKSIKTDAINFDCSEARIADSNSNGLNTTHSQSSLVETFSSSDAYMLMYHLKHTKNAAESGGIICANHQEREGVAVAVLDGAPLPFHLYDEIQNFNASYVDACQQYNNRKELELNRISERRQEVRSILAEAPVQPLEQPFYWISSDWLRQWADNIIPTSLDNTSIQCSHGKIPVSKVTSMKRLSAKAWDKLFSKYGGGPALSHHDHCMDCLIHGAKTVVSADSYRDRRESMKSLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHGQLMPEQAPGAKRVLIPESFWLFLYEDAVSVNPDDPLGGPTFSSDSGECSQCSNELSEVACLEDSLRLVKQRQRQNHEKLFQAKNMPLSLHCKYFLVPSLWISKWRNYISPTLKNSEKPESLDGVINSLMCEKHSQLVERPPELVFRRGAIIQRESSVGGLTIISENDWKCFCEEWGGIETEGISATIDHVNNSEKVLTGSGEEMLMGEDQLGTGDKMNNENGTGQILIRTCPEVCESCIGERESCELMQKLNYCNEDICVILVRGKEVPRSILEASKGIIETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRTIDAENECATLADVNIFAGDQIIVRDSEIHENRDIADELCNDKMDLQHTEEGFRGTLLTANVSSQVV* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1193 1082 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Apr5g1193 1082 ProSiteProfiles DUSP domain profile. 748 868 IPR006615 GO:0004843
Apr5g1193 1082 ProSiteProfiles DUSP domain profile. 513 605 IPR006615 GO:0004843
Apr5g1193 1082 SUPERFAMILY DUSP-like 513 605 IPR035927 -
Apr5g1193 1082 SUPERFAMILY Cysteine proteinases 105 447 IPR038765 -
Apr5g1193 1082 Gene3D - 971 1042 - -
Apr5g1193 1082 SMART dusp 531 607 IPR006615 GO:0004843
Apr5g1193 1082 ProSiteProfiles DUSP domain profile. 620 727 IPR006615 GO:0004843
Apr5g1193 1082 Gene3D - 504 607 IPR035927 -
Apr5g1193 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Apr5g1193 1082 Gene3D Cysteine proteinases 90 450 - -
Apr5g1193 1082 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Apr5g1193 1082 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Apr5g1193 1082 MobiDBLite consensus disorder prediction 1 22 - -
Apr5g1193 1082 Gene3D - 744 864 IPR035927 -
Apr5g1193 1082 CDD Ubl_USP48 972 1073 IPR044743 GO:0004197|GO:0004843|GO:0016579
Apr5g1193 1082 SUPERFAMILY Ubiquitin-like 975 1041 IPR029071 -
Apr5g1193 1082 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Apr5g1193 1082 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1052 - -
Apr5g1193 1082 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1193 Apr-Chr5 16367078 16377622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1193 105 385 Miscellaneous Gene Families AT4G31670 30.233 1.06e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1193 - - gmx:100815770 1991.85