Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1191 ATGGCAATTCTCTGCGCGCCATTTCCATTTCTTTTACTAAGATCCTCGTCCAAGTCCACGTTAAACATATTATTCACAAACCCAACAAGAAGAATTCGGTTCCCAACGATGAACCTATGCGCCAAATCCGAACCTTTCTCGGCCTCTTCCTCTTCGTCATCGTTCCTAGTGCCAGAGCAAGATGCTAACGACATGGACCGTGTAGCCGACAACACATTTCAAAGGTACACGTCCAACACCAAGAGGAGTGGCAAGGGAACAGCCATTGTGTGGTTCAGAAACGATCTCAGAGTATTGGATAATGAGGCTCTCTTTAAGGCATGGCTTTCCTCCGAAATTGTGTTACCTGTCTATTGTGTTGATCCTCGACTCTTTGCCACCACTTATCATTTTGGGTTTCCAAAAACCGGGGCATTGAGAGCGCAATTTCTCCTTGAATGCTTGGCTGACTTGAGGAAGAATTTGATTAAAAAAGGGCTTAATTTGCTCATACGACATGGCAAACCTGAGGACATTCTTCCTTCTCTTGCAAAAGCTTTTGGAGCTCATACAGTGTATGCGCAGAAAGAAACATGCAGTGAGGAGCTGAATGTTGAAAGCTTAGTCAGCAAAGGTCTTCAACAAGTGGTGATATCTCCTGAGGAATCCACTGGTGTGACAGTTTCAAACAAAGTTCCTAAGTTGCAGTTTATTTGGGGTACCACAATGTACCACCTTGATGACCTCCCTTTTGATGACACTTGTTTGCCAGATGTGTATACTCAGTTTCGTAAGATTGTTGAAGCCAAATGTACCATACGCACATGCATCAAACTTCCAGCATCTCTTGGACCATCTCCCCCAATTGAGGATTGGGGATGCCTTCCTTCATTAGAGCAGCTGGGACTTTGCACACAGAATGTAGGTTTTGCCATAATTTTTGGACATTCTTCAAGATTTCTGCATGTTAGCAAAGGGATGAAGTTTGTGGGGGGTGAAACTGCAGCATTGAGCAGAGTATATGAGTACTTTTGGAAGAAGGATTTGCTAAAGGTCTACAAAGAGACCAGAAATGGAATGTTGGGGCCTGATTATTCTACCAAATTCTCACCCTGGCTTGCCTCAGGAAGCTTGTCTCCTCGTTTCATACATGAAGAGGTTAAAAGATACGAGAATGAAAGACTAGCAAATAGTTCTACCTATTGGGTTTTGTTCGAGTTGATATGGAGAGATTACTTTAGGTTCTTATCTCTGAAATATGGGAATTCACTTTTCCATTTAGGTGGCCCTAGGAAAGTTCAGCACAATCGGAGCCAAGACAAGAATTTGTTTGAATCTTGGAGAGATGGTTGTACGGGGTATCCTCTAATAGATGCCAACATGAAAGAACTATCAACTACTGGGTTTATGTCAAATCGAGGACGCCAGATTGTGTGTTCCTTTCTTGTTCGAGATATGGGCATAGATTGGCGCATGGGGGCAGAATGGTTTGAGACGTGTCTTTTGGATTATGATCCGTGCTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAGCACAAACATATGACCCTGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTACGAAAAATTCCAAAAGATAAAAGGAATTTTCCTGGAAATTTATACATTCGTCAAATCGTGCCTCTTAAGTTTGGAACAACTAGTAGACAACATAATGAGGACAAATCCCTTGGTGCAAGAAGAGCCAATGACAGAGGAAGTGAAAGAAGATGGAATATGAGATAA 1800 0.4244 MAILCAPFPFLLLRSSSKSTLNILFTNPTRRIRFPTMNLCAKSEPFSASSSSSSFLVPEQDANDMDRVADNTFQRYTSNTKRSGKGTAIVWFRNDLRVLDNEALFKAWLSSEIVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLADLRKNLIKKGLNLLIRHGKPEDILPSLAKAFGAHTVYAQKETCSEELNVESLVSKGLQQVVISPEESTGVTVSNKVPKLQFIWGTTMYHLDDLPFDDTCLPDVYTQFRKIVEAKCTIRTCIKLPASLGPSPPIEDWGCLPSLEQLGLCTQNVGFAIIFGHSSRFLHVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIHEEVKRYENERLANSSTYWVLFELIWRDYFRFLSLKYGNSLFHLGGPRKVQHNRSQDKNLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRKIPKDKRNFPGNLYIRQIVPLKFGTTSRQHNEDKSLGARRANDRGSERRWNMR* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1191 599 Pfam FAD binding domain of DNA photolyase 398 553 IPR005101 -
Apr5g1191 599 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 419 573 - -
Apr5g1191 599 PANTHER CRYPTOCHROME DASH 77 577 - -
Apr5g1191 599 TIGRFAM crypto_DASH: cryptochrome, DASH family 87 544 IPR014133 GO:0003913|GO:0006281
Apr5g1191 599 Pfam DNA photolyase 88 270 IPR006050 -
Apr5g1191 599 MobiDBLite consensus disorder prediction 573 599 - -
Apr5g1191 599 PRINTS DNA photolyase signature 445 461 IPR002081 -
Apr5g1191 599 PRINTS DNA photolyase signature 465 483 IPR002081 -
Apr5g1191 599 PRINTS DNA photolyase signature 504 518 IPR002081 -
Apr5g1191 599 Gene3D - 234 418 - -
Apr5g1191 599 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 85 282 IPR036155 -
Apr5g1191 599 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 320 556 IPR036134 -
Apr5g1191 599 PANTHER CRYPTOCHROME 77 577 IPR002081 -
Apr5g1191 599 MobiDBLite consensus disorder prediction 572 599 - -
Apr5g1191 599 Gene3D HUPs 53 233 IPR014729 -
Apr5g1191 599 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 86 221 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1191 Apr-Chr5 16352292 16357506 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1191 K25656 - gmx:100783312 987.252