Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1153 ATGGGCATAACAGAAGCATGCTCCAGATTCCTCGGGGACTTTTTACAAGCATTCAAATGCTCACAACCAAGCTCAGTGCCTCACATTGATCACAATCATAGTCCTAACTGCAAGCCACAGAACATGCTCAAACTTGATGACAAGATGGTTCGTGCTCTTGTTGCTGTTTTTGGCATGGAAAGCAATGGAAGAATCAAGAAGGAAAATGCTAAGAAGGTTGTGGAGAAGCTTGGTTTGATATATGGTTGTGAGGAGGAGAAACCCATATCAGGATTTGAGCTAAGTGAGGGTAGCTTGCAAGATGATGAAGTGCCTGTGGAAGAGGTGCTTGGTGAATTGGAAGACATGTCAAAGCGCAGTGAGCTGTTACGTGAAGCCTTCAAAATATTTGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGTTTGGGTTTGGACAAAGGTTGGGATATGAATACTATTGAGAAGATGGTGAAGGTTGTAGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTGATGATGGGATAG 561 0.426 MGITEACSRFLGDFLQAFKCSQPSSVPHIDHNHSPNCKPQNMLKLDDKMVRALVAVFGMESNGRIKKENAKKVVEKLGLIYGCEEEKPISGFELSEGSLQDDEVPVEEVLGELEDMSKRSELLREAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIEKMVKVVDLNFDGKVDFGEFELMMG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1153 186 SUPERFAMILY EF-hand 48 185 IPR011992 -
Apr5g1153 186 CDD EFh 123 181 IPR002048 GO:0005509
Apr5g1153 186 Pfam EF-hand domain pair 122 185 IPR002048 GO:0005509
Apr5g1153 186 ProSiteProfiles EF-hand calcium-binding domain profile. 156 186 IPR002048 GO:0005509
Apr5g1153 186 PANTHER CALCIUM-BINDING PROTEIN CML42 109 185 - -
Apr5g1153 186 SMART efh_1 160 186 IPR002048 GO:0005509
Apr5g1153 186 SMART efh_1 122 150 IPR002048 GO:0005509
Apr5g1153 186 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Apr5g1153 186 Coils Coil 106 126 - -
Apr5g1153 186 Gene3D - 32 186 - -
Apr5g1153 186 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Apr5g1153 186 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 109 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1153 Apr-Chr5 16080832 16081392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1153 123 185 EF-hand Containing Proteins AT4G20780 58.730 4.73e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1153 - - gmx:100527700 284.648