Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1149 ATGATGGGTGTTAGAGAACTCGAGAACCGTTTCGTCACAACCTTGAAGAACTGCGTGAAAATAACGGAACTGAAAAAGATTCATTGCCACATCGTGAAGCTCTCACTGTCACAAAGCAACTTTTTGGCTACCAAGATGGTGGATTTATGCGACAACTTGGGCCACGTAGGTTATGCGACCTTGTTGTTCCAACAACTAGTTGACCCGAACGTGTTTGCTTACAACGCGATAATCAGAACCTACACCCATAACCACAAGCATTCCCTAGCAATCACTCTGTTCATCCAAATGCTTAGAAATCCAACGAAATCAGCTTTTCCAGACAGATTCACGTTCCCGTTTGTGATAAAATCGTGTTCGGGTCTTCTGTGTAATTGTTTTGGGCAGCAAGTTCATGCTCTAGTTTGCAAATTTGGGCGAAAATCGCATGCAATAACTGAGAATGCACTAATTGATATGTATACAAAATGTGGTGTTTTGAGCAATGCATACAAAGTCTTTGAGCAAATGACTGAGAGAGACGCAGTTTCTTGGAATAGTTTAATGTTTGGGTACGTGCAATTGGGGCAGATGAAGAGTGCAAGGGCACTGTTTGATAAAATGCCTTCTAGGACTATCGTTTCTTGGACTAATATGATAAGTGGGTATGCTAGAACTGGGTGTTATGTTGATGCATTGGACATTTTTCGTGAGATGCAAATGGTGGGTGTTGAACCCGATGAGATCAGTGTTATGTCTGTTTTGCCAGCGTGTGCACAGCTTGGGGCTCTTAAGATGGGAAAATGGATTCACATGTATTCGGATAAAAATGGGTTTATGAAGAAGACTGGTATATGTAATGCACTGGTTGAAATGTATGCCAAGTGTGGTTGCATCGATGAAGCTTTGCGCTTGTTTGATCGGTTGGTTGAGAAGGATGTGATTTCATGGAGTACCATGATTGGAGGACTGGCAAATCATGGAAAAGGTTATGAAGCAATTCAACTCTTTCAAGTCATGCAGAGAGTAGGAGTCGCTCCTAATGGGATAACCTTTCTTGGTGTTTTGTCAGCTTGTGCTCATACAGGGTTATGGAATGAGGGATTGAAGTATTTTGATGTGATGAGGCTGGATTATCATATAGAGCCACAGATTGAGCACTATGGTTGCCTAGTTGATCTTCTAGGACGGTTGGGACGCCTTGATCAGGCTCTTGAAACAATACTGAAGATGCCACTAAAACCAGATTCGAGGATATGGAACTCTTTGCTGAGCTCTTGCAGGATTCATCGTAATCTTGAGGTTGCTATCGTTGCAATGGAACAGCTTTCGGAGCTTGAGCCTGAGGAATCTGGGAACTATGTCTTGCTTGCTAACATATATGCAGAACTTGGCAAGTGGGAAGGTGTATCAAATATTAGGAAACTCATAAGAAGCAAGAGGATAAAGAAAACCCCCGGTAGTAGCTTGATTGAGGTTGACAACGTTGTTCAAGAATTTGTATCAGGTGACGATTCAAAGGCGTTCTCGCAAAATGTCTTTAGGATACTAGAAGGTTTGGCTTTACACCAAAGTAGAACCAATGACTTGATAGAATTTGTCGACGAAGATGCAGGTCAAGTTTATAGTTAA 1611 0.4196 MMGVRELENRFVTTLKNCVKITELKKIHCHIVKLSLSQSNFLATKMVDLCDNLGHVGYATLLFQQLVDPNVFAYNAIIRTYTHNHKHSLAITLFIQMLRNPTKSAFPDRFTFPFVIKSCSGLLCNCFGQQVHALVCKFGRKSHAITENALIDMYTKCGVLSNAYKVFEQMTERDAVSWNSLMFGYVQLGQMKSARALFDKMPSRTIVSWTNMISGYARTGCYVDALDIFREMQMVGVEPDEISVMSVLPACAQLGALKMGKWIHMYSDKNGFMKKTGICNALVEMYAKCGCIDEALRLFDRLVEKDVISWSTMIGGLANHGKGYEAIQLFQVMQRVGVAPNGITFLGVLSACAHTGLWNEGLKYFDVMRLDYHIEPQIEHYGCLVDLLGRLGRLDQALETILKMPLKPDSRIWNSLLSSCRIHRNLEVAIVAMEQLSELEPEESGNYVLLANIYAELGKWEGVSNIRKLIRSKRIKKTPGSSLIEVDNVVQEFVSGDDSKAFSQNVFRILEGLALHQSRTNDLIEFVDEDAGQVYS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1149 536 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 530 - -
Apr5g1149 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Apr5g1149 536 Gene3D Tetratricopeptide repeat domain 8 123 IPR011990 GO:0005515
Apr5g1149 536 Gene3D Tetratricopeptide repeat domain 280 492 IPR011990 GO:0005515
Apr5g1149 536 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Apr5g1149 536 TIGRFAM PPR: pentatricopeptide repeat domain 176 204 IPR002885 -
Apr5g1149 536 TIGRFAM PPR: pentatricopeptide repeat domain 278 307 IPR002885 -
Apr5g1149 536 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Apr5g1149 536 Pfam PPR repeat family 305 353 IPR002885 -
Apr5g1149 536 Pfam PPR repeat family 69 119 IPR002885 -
Apr5g1149 536 Pfam PPR repeat family 205 252 IPR002885 -
Apr5g1149 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 305 IPR002885 -
Apr5g1149 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Apr5g1149 536 Pfam PPR repeat 176 204 IPR002885 -
Apr5g1149 536 Pfam PPR repeat 380 404 IPR002885 -
Apr5g1149 536 Pfam PPR repeat 148 173 IPR002885 -
Apr5g1149 536 SUPERFAMILY TPR-like 154 462 IPR011990 GO:0005515
Apr5g1149 536 Pfam E motif 423 485 IPR046848 -
Apr5g1149 536 Gene3D Tetratricopeptide repeat domain 128 263 IPR011990 GO:0005515
Apr5g1149 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Apr5g1149 536 PANTHER OS05G0439300 PROTEIN 4 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1149 Apr-Chr5 16047374 16048984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1149 13 513 Glycoside Hydrolase AT3G49170 30.906 5.03e-81 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1149 - - gmx:100806006 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1149 5 16047374 16048984 Apr5g1149 5 16047374 16048984 ECH