Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1148 ATGAACGTGCGTAGGCTAATCAATGAGATCCTGAACAAGTGTTCGAAGCATCGTTTGCTTGATCAGGGAAAGCAAGTGCATGGGGTTGTGGAGAAACTAGGGTTTGGGCATGATTTGGTTTTAAACAATGATCTTATAGATATGTATGCAAAGTGTGGCACTGTGGACCTCGCTTGTTACGTGTTTGATCGAATGCCTCAGAGAAGTGTAGTGTCTTGGACGGCTCTTATGTGTGGGTATTTGCAAAATGGTGATGCCAAAACTTCTTTACTCTTGTTCTCTAAAATGGGTCGCTCAGATGTTAAGCCTAATGAGTTCACACTGTCCACCAGTCTAAAGGCATCGGGGGTTTTGGGAATTCCTGAGAATGGAATGCAGATTCATGGGCTTTGTGCAAAATCTAATTTTGACTGGGTATCCGTCGTTGGCAATTCTATAATTGACATGTACTCGAAGTGTGGTAGGGTTAGTGAGGCAGCGCGAGTGTTTACCACTTTGCCAGTTAGAAATGTTATAAGTTGGAATGCAATGATTGCTGGATACACCAATGGAAGAAATGGTGAAGAGGCTTTGAATCTGTTTAGTAAAATGCAAGAGAAGGGGGAAGTTCCTGATGGGTATACATATTCAAGCACGTTGAAGGCGTGTACTTGTGTTGGTGCAATAGGAGAAGGAATGCAAATTCATGCTGCTTTAATTAGAAGTGGATTTCCTTACTTGGCTCAATCAGTGGTTGCAAGTGCTTTGCTTGATCTGTATGTCAAATGCAGGCGCATAACTGAAGCTAGGAGGGTGTTTGATCGAACTGAACAGAAGAGTGTGATGTCTTGGACCACACTAATTCTTGGTTATGCACAAGAAGACAAGTTGCCAGAAGCCATGCACTTGTTTAAGCAGTTGAGAGAGAGCAGAAATGAAGTGGATGAGTGTGTACTCTCGAGTCTCATAGGTGTGTTTGCTGATTTTGCCTTTGTAGAGCAGGGGAAGCAAATGCATGCTTATACCATAAAAGTCCCGTACGGTTTAGAAATGTCAGTGGCTAATTCAGTTCTGGATATGTACATGAAATGCGGATTAACAGATAAAGCAGATGCACTTTTCAGAGAGATGCCAGCGACAAACTTGATCTCATGGACAGTTATGATCACGGGCTATGGAAAACATGGTATTGGTAATAAAGCAGTTGAACTTTTCAACGAAATGCAAGTGAATGGAATTAAACCTGACAGTGTGAGTTACTTAGCTGTGCTCTCAGCTTGCAGCCATTCTGGACTCATCAAAGAAGGTCAAAAATACTTCTCTAGTTTGTGTAACAATCATCAGTGCAAACCACAAGTAGAGCATTATGCTTGCATGGTTGATCTCCTTGGACGAGCCGGGCGCTTAAAGGAAGCAAAGGATCTCATTCAGAAAATGCCCTTGAAGCCAAGTGTGGGCATATGGCAGACATTACTTAGTGTTTGTAGAATGCATGGAGATGTGGAGATGGGGAAGCATGTGGGAGAGATACTTTTGAGATTGGATGGTAACAATCCAGCCAACTATGTCATGATGTCAAACATCTATGCCGATGCAGGGTATTGGAAAGAGAGTGAGCAAATAAGAGGTTACGTGAAGAGAAAGGGATTGAAGAAAGAAGCAGGACGTAGTTGGGTAGAGATAGACAAGGAAATCCACATTTTCTACAATGGGGATGGCATGCATCCACTTATAGAGAAGATTCATCAAGTGTTGAAAGAAATGGAGAAGAGGGTGCAGGAAGAAATAGGCCATGTTCATAACGTGAAATTTGCATTGCATGATGTTGAAGAGGAGTCAAAGGTGGAGAGTTTGCGGGTTCATAGCGAGAAGTTGGCTATTGGATTGGTTTTGGTTCGAAGTGGGCTAAAAGGAGAAAGGATGATTAGGATTTTCAAGAACTTGAGGGTTTGTGGGGATTGCCATGCATTCATCAAGGGTTTGTCCAAGGTTTTGAAGATTGTATTTGTGGTGAGAGATGCAAATAGGTTTCATAAATTTGAGAACGGTTTGTGTTCATGTGGAGATTACTGGTAA 2055 0.4224 MNVRRLINEILNKCSKHRLLDQGKQVHGVVEKLGFGHDLVLNNDLIDMYAKCGTVDLACYVFDRMPQRSVVSWTALMCGYLQNGDAKTSLLLFSKMGRSDVKPNEFTLSTSLKASGVLGIPENGMQIHGLCAKSNFDWVSVVGNSIIDMYSKCGRVSEAARVFTTLPVRNVISWNAMIAGYTNGRNGEEALNLFSKMQEKGEVPDGYTYSSTLKACTCVGAIGEGMQIHAALIRSGFPYLAQSVVASALLDLYVKCRRITEARRVFDRTEQKSVMSWTTLILGYAQEDKLPEAMHLFKQLRESRNEVDECVLSSLIGVFADFAFVEQGKQMHAYTIKVPYGLEMSVANSVLDMYMKCGLTDKADALFREMPATNLISWTVMITGYGKHGIGNKAVELFNEMQVNGIKPDSVSYLAVLSACSHSGLIKEGQKYFSSLCNNHQCKPQVEHYACMVDLLGRAGRLKEAKDLIQKMPLKPSVGIWQTLLSVCRMHGDVEMGKHVGEILLRLDGNNPANYVMMSNIYADAGYWKESEQIRGYVKRKGLKKEAGRSWVEIDKEIHIFYNGDGMHPLIEKIHQVLKEMEKRVQEEIGHVHNVKFALHDVEEESKVESLRVHSEKLAIGLVLVRSGLKGERMIRIFKNLRVCGDCHAFIKGLSKVLKIVFVVRDANRFHKFENGLCSCGDYW* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1148 684 Pfam DYW family of nucleic acid deaminases 590 684 IPR032867 GO:0008270
Apr5g1148 684 Pfam E motif 491 553 IPR046848 -
Apr5g1148 684 Pfam PPR repeat 247 271 IPR002885 -
Apr5g1148 684 Pfam PPR repeat 276 303 IPR002885 -
Apr5g1148 684 Pfam PPR repeat 144 163 IPR002885 -
Apr5g1148 684 Pfam PPR repeat 449 473 IPR002885 -
Apr5g1148 684 Pfam PPR repeat 348 370 IPR002885 -
Apr5g1148 684 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 642 - -
Apr5g1148 684 Gene3D Tetratricopeptide repeat domain 2 117 IPR011990 GO:0005515
Apr5g1148 684 Gene3D Tetratricopeptide repeat domain 125 222 IPR011990 GO:0005515
Apr5g1148 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Apr5g1148 684 Pfam PPR repeat family 169 216 IPR002885 -
Apr5g1148 684 Pfam PPR repeat family 374 421 IPR002885 -
Apr5g1148 684 Pfam PPR repeat family 69 114 IPR002885 -
Apr5g1148 684 Gene3D Tetratricopeptide repeat domain 223 340 IPR011990 GO:0005515
Apr5g1148 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Apr5g1148 684 TIGRFAM PPR: pentatricopeptide repeat domain 449 472 IPR002885 -
Apr5g1148 684 TIGRFAM PPR: pentatricopeptide repeat domain 71 105 IPR002885 -
Apr5g1148 684 TIGRFAM PPR: pentatricopeptide repeat domain 376 410 IPR002885 -
Apr5g1148 684 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Apr5g1148 684 TIGRFAM PPR: pentatricopeptide repeat domain 348 371 IPR002885 -
Apr5g1148 684 PANTHER - 1 642 - -
Apr5g1148 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Apr5g1148 684 Gene3D Tetratricopeptide repeat domain 341 566 IPR011990 GO:0005515
Apr5g1148 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1148 Apr-Chr5 16045317 16047371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1148 10 684 Glycoside Hydrolase AT3G49170 37.645 8.87e-157 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1148 - - gmx:100806657 1182.93