LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1136	ATGTCAATCAGATCTCGCCACTTCAGCTTCTCATACGTCGAAAGTGTATCTGGCAGGAAGAGTGAAGTCTCTGATCTTAAATCACAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCGGGTGCTGATGATTCTAAGCGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCGTCTCTCTTTGGCGAGATGGTAATGTGCTCGGCAACATCAGATATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCAAAGGTCAATCCTGACCTTGCACTTCTGACGATTAATTTTCTACAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGATTAGCATTGAGGAGTTTGTGTTCGCTCCGAGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCAGTTATAGGGGCTTTGAAACTATATCATATATCAGCTTCCACCTGTATTGATGCAGATTTTCCAGCAACTCTGAAACATTTGATGCTTAATGACCCTGATACGCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTGGAGTCATCCACATCAGAGGAAGTGGCCAGGGAGAGAGAATTTCTGCTTAGCAAGCCAGTCGTATATCACTTTCTAAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGCTGGAATTGGTGGCCAAGTACATTCCATCTGATACCAGTGAAATTTTTGACATAATGAATCTTCTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTGTTAAAGTATTTCTACAGTTGACTTTGTCTATGGCTGATGTTCATCAGCAGGTATATGAGCGTATTAAAGCCCCTCTCCTAACTCAAGTGAGCTCTGGAAGTCCAGAACAATCTTATGCAGTTTTAAGTCACCTGCATCTGTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGCAACACTTACGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGATATTCCAATTGCAAGGGAATCAATTCGGGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGCCTTCTGCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTAAAAGATCTGCTGAGAAAATATCCACAGTGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGCAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGCTGGGGGAATATTCTCAGGACATGCATGATGCGCCATATGTCTTGGAGGGTTTAGTTGAAAATTGGGATGAGGAGCATTCTGCTGAGGTCCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGAGACCTCCTGAAACTCAAAAAGCATTAGGAGCTGCATTGGCTGCTGGCCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTGTTCTATTACAGGCTTCTGCAATACAACGTATCAGTGGCAGAGAGTGTAGTGAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAGAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTATCTGTTGTATATCAGAAGCCCTCTTACATGTTCACTGATAAAGAACACCGAGGAACATTTGAGTTTTCAGATGAACTTGGAAATCTATCTATCAGTGCAGAGTCTGGAGATTCTGTTGTTCCATCTCAGAGGGTGGAAGCAAATGACAAGGATCTGCTTCTAAGTACCACAGAAAAAGAGGAAGGGAGAGATCCTGGCAGCAATGGTTCTGCCTATAATGCTCCTTCCTATAATGGTTCATCTGCCCCTTCTACAAATTCGCAACCACTTGCAGATTTAGCACTTCCAACTAACAGTGTAACTAGTCAAGCTCCAGCATCTAGCTTCGCAATCGATGATCTGCTTGGTTTAGATTTTCCAGTTGGGACTGCAGCCACACCCCCACCTCCTCCATTGAACCTCAACCCAAAAGCTGTACTGGATCCCAGCACATTTCAGCAAAAATGGCGCCAACTTCCAATATCTTTATCAGAGGAATATTCTCTAAGTCCTCCCGGGATTGCATCATTGACAACTCCCCATGCACTTCTACGGCACATGCAAAGTCATTCGATACACTGCATTGCATCTGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCACAGAAAGCTGAAGAAACATCAATTTATCTTGTGGAATGCATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCCGATGACCAAAGCTCATCCAAGGCCTTCTCAACATTATTCCAATCAGCCTTGTCCAAATTTGGTTTACCTTGA	2538	0.4243	MSIRSRHFSFSYVESVSGRKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGALKLYHISASTCIDADFPATLKHLMLNDPDTQVVANCLSALQEIWTLESSTSEEVAREREFLLSKPVVYHFLNRIKEFSEWAQCLVLELVAKYIPSDTSEIFDIMNLLEDRLQHANGAVVLATVKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLEGLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFSDELGNLSISAESGDSVVPSQRVEANDKDLLLSTTEKEEGRDPGSNGSAYNAPSYNGSSAPSTNSQPLADLALPTNSVTSQAPASSFAIDDLLGLDFPVGTAATPPPPPLNLNPKAVLDPSTFQQKWRQLPISLSEEYSLSPPGIASLTTPHALLRHMQSHSIHCIASGGQSPNFKFFFFAQKAEETSIYLVECIINTSSAKSQIKIKADDQSSSKAFSTLFQSALSKFGLP*	846

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1136	845	Gene3D	-	714	843	IPR012295	-
	Apr5g1136	845	PANTHER	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	20	843	IPR026739	GO:0016192
	Apr5g1136	845	MobiDBLite	consensus disorder prediction	642	656	-	-
	Apr5g1136	845	Pfam	Beta2-adaptin appendage, C-terminal sub-domain	726	839	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Apr5g1136	845	SUPERFAMILY	ARM repeat	29	599	IPR016024	-
	Apr5g1136	845	MobiDBLite	consensus disorder prediction	660	683	-	-
	Apr5g1136	845	PIRSF	Beta_adaptin	12	845	IPR016342	GO:0015031\|GO:0030276
	Apr5g1136	845	Gene3D	-	12	610	IPR011989	-
	Apr5g1136	845	PANTHER	AP-4 COMPLEX SUBUNIT BETA-1	20	843	-	-
	Apr5g1136	845	SMART	B2_adapt_app_C_2	723	840	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Apr5g1136	845	MobiDBLite	consensus disorder prediction	624	683	-	-
	Apr5g1136	845	Pfam	Adaptin N terminal region	34	552	IPR002553	GO:0006886\|GO:0016192\|GO:0030117

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1136	Apr-Chr5	15938772	15947973	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1136	-		-	gmx:100801153	1523.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g1136	5	15938772	15947973	Apr5g1136	5	15938772	15947973	ECH