Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1124 ATGCAGGCTTCGCGGGCTAGGCTGTTCAAGGAGTACAAAGAGGTGCAGCGAGAGAAGGCGGTTGATCCTGATATTCAACTGGTGTGTGATGATTCTAATATTTTTAAATGGACGGCTCTCATTAAGGGACCCTCTGAGACTCCTTTTGAGGGGGGTGTATTCCAACTTGCTTTTTCTGTTCCGGAACAGTATCCTCTGCAACCGCCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCGAATGTGCATTTTAAGACCGGGGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCAGCTTGGACACTTCAATCTGTCTGTAGGGCTATAATTGCTTTGATGGCTCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTGCGTTCAGGTGATGTTAGAGGGTACCAGTCCATGGCAAGAATGTACACCAGGCTTGCAGCAATGCCAAAGAAAGGCTGA 474 0.4662 MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1124 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 157 - -
Apr5g1124 157 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 157 - -
Apr5g1124 157 CDD UBCc 7 148 IPR000608 -
Apr5g1124 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Apr5g1124 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Apr5g1124 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Apr5g1124 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Apr5g1124 157 SMART ubc_7 6 153 - -
Apr5g1124 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1124 Apr-Chr5 15840667 15843331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1124 7 123 Miscellaneous Gene Families AT3G17000 35.537 1.15e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1124 K10689 - ini:109190965 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1124 5 15840667 15843331 Apr5g1124 5 15840667 15843331 ECH