Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1118 ATGGCATCTATTAGAAGAGCCTTGTCTCCAGTGCCTAGACCTGGAACTATAGCCAATGTAGAAGTCTGTTCAGTAGCTTCTCCCTTGTCTAAGTCGTCATCAAGTCCTCAGAACTGCTCACCATCGGCTGGATTGGGCCACCGTGCTTTTGTGCTTGGTGTTTTCTCCCCAAGATCTTTCAGGGCTTTTGAGAGATCAAAGCCAAGGGGCCAGCATTGGAGGAAGGTGCTTTTCCACTTCTTCATTTGTTTCATGGTTGGTGTTTCTATTGGACTCATCCCACCTGTATCAACTAACATGTCCTTGAGTCTTATGCCAAAGCATCAAGCCTTCTCTTTTGAGGTGATATCTACAGTTAGAAATCTCCAGCCACTTGAAAATGTGAAGATAAATATGACACCATCAATTGATGGGGCTGTGAAGTTTAATGCCACCTTGAAATCAGCAGAGCAAGAAGCAATAGATGGCTTGGCATATAATGTCTCCAATAGCCAATTCAGTGAAGATCCATACTTAGAGTCTCAGAAGCTGCTCATAATTGTGACCCCGACCTACAGTCATCAATTTCAAGCATATTACTTACATCGTTTGTCACAGTCTTTAAAATTGGTCCCGCCTCCCTTGCTGTGGATAGTTGTTGAGACGACTTCCCAATCCGAAGAAACTGCTGACATCTTAAGGAGTAGTGGCATTATGTATAGGCATCTCATTTGCAAAACGAATCTAACCAACCTAAGACATAGGAACATTCATCAAAGAAATGTTGCAATGGCTCACATTGAAACTCATCGCCTTGATGGAATTGTGTACTTTGCAGATGAGGATAACATCTACTCAGTGGAGCTCTTTCAGCAAATGAGAGAAATAAGGCGATTTGGAACATGGACTGTAGCAAGACTATCTGAGGATAAAAGTAGCATTATCTTACAAGGGCCCATTTGTAATGGAAGCCGAGTAATTGGATGGCACATAAATGAATCAAATGATAAATCTAAAAGATTTCATGCTGAAATGCCGGGTTTTGCATTCAATAGTACGATACTCTGGGATCCAAAGAAGTGGCACCGCCCCACTCTTGAACCAATGAGGCAACTTGACTCAGTCAAGGAGAGTTTGTGGGTTAGCTCATTGATTGAGCAGGTGGTTGAAGATGAAAGTCAGATGGAGGGCTTAATGGAAAACTGCTCAAGAGTTATGGTCTGGCATGTTGATCTTGAATCATCTTATTCATTCTACCCTCAGAAATGGATTGTAAAGAACAAACTAAATGTCATTCTTCATCTTCCACTTGTGTGA 1296 0.4198 MASIRRALSPVPRPGTIANVEVCSVASPLSKSSSSPQNCSPSAGLGHRAFVLGVFSPRSFRAFERSKPRGQHWRKVLFHFFICFMVGVSIGLIPPVSTNMSLSLMPKHQAFSFEVISTVRNLQPLENVKINMTPSIDGAVKFNATLKSAEQEAIDGLAYNVSNSQFSEDPYLESQKLLIIVTPTYSHQFQAYYLHRLSQSLKLVPPPLLWIVVETTSQSEETADILRSSGIMYRHLICKTNLTNLRHRNIHQRNVAMAHIETHRLDGIVYFADEDNIYSVELFQQMREIRRFGTWTVARLSEDKSSIILQGPICNGSRVIGWHINESNDKSKRFHAEMPGFAFNSTILWDPKKWHRPTLEPMRQLDSVKESLWVSSLIEQVVEDESQMEGLMENCSRVMVWHVDLESSYSFYPQKWIVKNKLNVILHLPLV* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1118 431 CDD GlcAT-I 176 406 IPR005027 GO:0015018|GO:0016020
Apr5g1118 431 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 43 425 IPR005027 GO:0015018|GO:0016020
Apr5g1118 431 SUPERFAMILY Nucleotide-diphospho-sugar transferases 177 421 IPR029044 -
Apr5g1118 431 Pfam Glycosyltransferase family 43 197 406 IPR005027 GO:0015018|GO:0016020
Apr5g1118 431 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 177 422 IPR029044 -
Apr5g1118 431 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 43 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1118 Apr-Chr5 15776523 15780626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1118 1 428 Glycosyltransferase AT1G27600 44.522 1.33e-120 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1118 K20869 - gmx:100808765 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1118 5 15776523 15780626 Apr5g1118 5 15776523 15780626 ECH