Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1109 ATGAAAGGTCCAAATTACTATCTATCAAGCCAGAGAGATCTCTTTCATATAATTTTAAGCACCCATTGTTCTGATTTAATGATGGATTTCTATGGCAAGAGAACTCTCCTGAGCTTGATGGACACCGAAAAGCCAGAACCCCCACAATCCCCCATTCACCTTCGTGTCCAAACCCACAGAGAAATAAGCGAACAAGATGTTCAGTTTAGTCCTCCAAGACCTTCAAGTTCCGATAGCACAATGTTCCCAATGATGCCACCTCCATGCCCAGACTCTCCATGGACTCTTTCCCCTCTTCCAACTCCTTCTCCTTCTCTTCTTTATCATTGCATCGCTTCACTCCACCGCCACGAAGGTAACATCTATGCCATTGCAGCTTCAAAGGGTTTAGTCTTCACTGGCTCAAACAGCTGCAGGATTCGTGTTTGGAAGCAACCAGATTGCATGGATAGAGGGTACCTCAAAGCGAGTTCTGGTGAGGTAAGAGCCATTTTGGCTTATAGCAACATGCTTTTCTCCACGCATAAGGATCACAAGATTAGGATATGGACCTTTACTGTTTCGGATAACTTCAAGTCCAAGAAAGTTGGTACTCTTCCTAGAAAAACCTCCATTCTAATGTTCCCTTCTAGAGGAAAGAACACGCCTAAGCACAAAGACTCGGTATCTTGCATGGCTTATTACCACTCAGAAGGGCTCTTATACACTGGCTCTCATGACAGAACCGTGAAGGCTTGGCGTGTTTCTGATAGAAAATGCGTGGACTCGTTTGTAGCACATGAAGATAATGTGAATGCCATCTTGGTGAACCAAGATGATGGTTGTCTTTTCACTGGTTCCTCTGATGGGTCAGTGAAAATATGGAGAAGGGTGTACACCGAAGACTCACACACTCTCACAATGACTCTGAAGTTTCAACCTTCACCCGTTAATGCTCTAGCATTGAGTTGCTCCTTTAACCATTGTTTCCTCTATTCAGCGTCTTCTGATGGGATGATAAATTTTTGGGAGAAGGAGAGACTTTGTTATAGGTTCAACCATGGAGGGTTCTTGCAGGGTCACCGTTTTGCGATTCTTTGTTTAGCAACCGTTGGGAACATGATATTCAGTGGATCAGAGGACACAACTATAAGGGTTTGGAGAAGAGAAGAAGGAAGTTGCTACCATGAATGTTTGACGGTTTTGGATGGGCATAGAGGACCAGTGAGGTGTTTAGCTGCATGCCTTGAGATGGAGAAAGTTGTGATGGGGTTTTTGGTGTATAGTGCTAGTTTGGATCAAACGTTTAAGGTGTGGAGGATTAAGGTTTTGCCTGATGAAAAGATGTGCTTGGACTACAGTAGCAATCAGTGTGAGGCAAGAGTGAAGATTAGAGACTATGATATGAGCCCGGTTTTGTCGCCTTCATGGGTAGAGAAGAAACTTCAAGGTAGCTACTTTCAGTAG 1446 0.4398 MKGPNYYLSSQRDLFHIILSTHCSDLMMDFYGKRTLLSLMDTEKPEPPQSPIHLRVQTHREISEQDVQFSPPRPSSSDSTMFPMMPPPCPDSPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSCRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDNFKSKKVGTLPRKTSILMFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSASSDGMINFWEKERLCYRFNHGGFLQGHRFAILCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCLDYSSNQCEARVKIRDYDMSPVLSPSWVEKKLQGSYFQ* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1109 481 SMART WD40_4 296 337 IPR001680 GO:0005515
Apr5g1109 481 SMART WD40_4 107 144 IPR001680 GO:0005515
Apr5g1109 481 SMART WD40_4 388 433 IPR001680 GO:0005515
Apr5g1109 481 SMART WD40_4 344 381 IPR001680 GO:0005515
Apr5g1109 481 SMART WD40_4 250 289 IPR001680 GO:0005515
Apr5g1109 481 SMART WD40_4 209 247 IPR001680 GO:0005515
Apr5g1109 481 SMART WD40_4 147 184 IPR001680 GO:0005515
Apr5g1109 481 Gene3D - 205 461 IPR015943 GO:0005515
Apr5g1109 481 Gene3D - 101 204 IPR015943 GO:0005515
Apr5g1109 481 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 28 474 IPR045182 -
Apr5g1109 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Apr5g1109 481 CDD WD40 110 433 - -
Apr5g1109 481 MobiDBLite consensus disorder prediction 61 83 - -
Apr5g1109 481 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Apr5g1109 481 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Apr5g1109 481 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Apr5g1109 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 288 IPR001680 GO:0005515
Apr5g1109 481 PANTHER OS01G0232200 PROTEIN 28 474 - -
Apr5g1109 481 SUPERFAMILY WD40 repeat-like 109 435 IPR036322 GO:0005515
Apr5g1109 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 249 - -
Apr5g1109 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 390 IPR001680 GO:0005515
Apr5g1109 481 MobiDBLite consensus disorder prediction 63 80 - -
Apr5g1109 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 288 - -
Apr5g1109 481 Pfam WD domain, G-beta repeat 350 380 IPR001680 GO:0005515
Apr5g1109 481 Pfam WD domain, G-beta repeat 252 288 IPR001680 GO:0005515
Apr5g1109 481 Pfam WD domain, G-beta repeat 390 432 IPR001680 GO:0005515
Apr5g1109 481 Pfam WD domain, G-beta repeat 218 246 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1109 Apr-Chr5 15711022 15712697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1109 218 437 Miscellaneous Gene Families AT5G08390 22.907 3.16e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1109 - - adu:107470716 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1109 5 15711022 15712697 Apr5g1109 5 15711022 15712697 ECH