Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1106 ATGGCCACTTCATATAATGCATTCCTAGTGAATTGCTCCATTCAGGAAAGACCCTCTCATGTTTCAGACAATTCTCGACCTAACAACCTTCCACCCTTCCATGCCTTAAAGCCAATCAAGAAAGTTCTGGCTATAGTCCCTTGGCAAATTGATGTTCCCAAAGCTATGACAAATACTGCAGCTAAATTACTTGACGCTTTTGTTGATTCCTTCTTTGAATTCATTGACCAACCATTGCTTCCATCTCAGAGTAACTTTGCTCCAGCGGAGGAATTGGGGGAAGCCATACTTGTGAGCAGCATTCAAGGACAAATTCCATATAATTTTCCAGAAGGTGTCTACGTTAGAAACGGACCAAATCCACTTTTTGGAGGACTGAAATCAACAAATTCCATGTTTGGGAGGTCAAGACACATTTGGGTGGAAGGAGAGGGAATGATTCATGCATTGTATTTTGAAAAATCAAGTAATGGGAATTGGACAGTTCTCTACAACAAGAAGCACGTTGAAACCGAAACATATAAACTTGAGAAACAACGAAGCAAACCATCGTTTCTACCGGCCATAGAAGGCGATTCACTGGCCATTTTGTCTGCTTATCTGCTAAACTGGTTGAGATTTGGCAAAGTAAACAAGTACATCAGCAACACAAATGTCTTTGAGCATTCAGGGAAGTTTTATTCGGTTGCTGAAAATCACATCCCTCAAGAGATTGATATCTTTACCCTGAAAACTTCAAAAAATTGGGATGTCAACGGAGCCTGGAATCGACCATTTACCAGCCATCCAAAGAAAGCTCCAGGTACAGAAGAGCTAGTTACATTGGGGGTTGCAGCAACAAAACCTTTTGCCGTTGTTGGAATTATTTCTGCTGATGGAAAGAAATTGGTTCATAAAGTTGATCTCAAATTAAACAGGTGCAGTCTATGCCATGAAATAGGTGTTACAAAGAGGTACAATGTGATATTGGATTTTCCACTAACCATTGATCTAAACAGACTTCTTAAAGGAGGCTCCTTAATAAAGTTTAGTAAGGAGGAATACGCGAGGATTGGAGTAATGCCACGCTATGGTGATGCCAACTCAATCAAATGGTTTGAGGTGGAACCTAATTGCACTTTTCACATCATCAATTCTTTTGAGGATGGTCACGAGGTTGTAGTAAGGGGCTGCAGATCTCTTGATTCACTAATTCCTAGACCTGACCCGAGCTTGGAGGAATTTGAGTGGTTATCTCGTTGTTATGAATGGAGATTAAATATGCATACAGGAGAAGTTAAGGAGAGAGATCTATGTGGAACGAACGTTGTTTATATGGATTTTCCCATGATCAATGGAAACTTGATAGGTATTAAAAATAAATATGCATACACACAAGTAGTTGATCCCATTGCAAGCTCTACTCAAGGTGTGCCAAAATATGGAGGTTTAGCGAAGCTCTATTTTGAGGAATCATGTGCAGAGTTCTCAATGCAACCTGTAAGGGTGAAATGTCATACATTTGAGAAGAATACATTTTGCAGTGGAGCTGCCTTTGTCCCTAAAGATGGGGGTGTTGAAGAAGATGATGGTTGGATCATAACTTTTGTTCACAATGAAGATACTAGCACATCTGAAGTTCATATAATCGACACAAAGAAGTTTTCTGATGAGACGGTTGCCAAAATTACAATGCCTCGCAGAGTGCCATATGGGTTTCATGGAGCTTTCATGCCAATCTCATTTCAGTCACAGTAG 1737 0.4018 MATSYNAFLVNCSIQERPSHVSDNSRPNNLPPFHALKPIKKVLAIVPWQIDVPKAMTNTAAKLLDAFVDSFFEFIDQPLLPSQSNFAPAEELGEAILVSSIQGQIPYNFPEGVYVRNGPNPLFGGLKSTNSMFGRSRHIWVEGEGMIHALYFEKSSNGNWTVLYNKKHVETETYKLEKQRSKPSFLPAIEGDSLAILSAYLLNWLRFGKVNKYISNTNVFEHSGKFYSVAENHIPQEIDIFTLKTSKNWDVNGAWNRPFTSHPKKAPGTEELVTLGVAATKPFAVVGIISADGKKLVHKVDLKLNRCSLCHEIGVTKRYNVILDFPLTIDLNRLLKGGSLIKFSKEEYARIGVMPRYGDANSIKWFEVEPNCTFHIINSFEDGHEVVVRGCRSLDSLIPRPDPSLEEFEWLSRCYEWRLNMHTGEVKERDLCGTNVVYMDFPMINGNLIGIKNKYAYTQVVDPIASSTQGVPKYGGLAKLYFEESCAEFSMQPVRVKCHTFEKNTFCSGAAFVPKDGGVEEDDGWIITFVHNEDTSTSEVHIIDTKKFSDETVAKITMPRRVPYGFHGAFMPISFQSQ* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1106 578 Pfam Retinal pigment epithelial membrane protein 91 572 IPR004294 GO:0016702
Apr5g1106 578 PANTHER OS06G0162550 PROTEIN 35 573 - -
Apr5g1106 578 PANTHER BETA-CAROTENE DIOXYGENASE 35 573 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1106 Apr-Chr5 15689615 15693496 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1106 - - gmx:100817738 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1106 5 15689615 15693496 Apr5g1106 5 15689615 15693496 ECH