Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1098 ATGGAAGACGCCGGGAAATATCTGAACTCCGGCGACCTATCGCGTAAGGTCGTCGACGTGGATGCGGGGGAAGCACACACTCTCCTTCTTACTGGGGATGGCAGTGTTTATTGTTGGGGTAGAGGAATGTTTGGTCGGCTTGGGATTGGGTCAGAAAAAGACGAGCTTTTTCCAGTACAAGTCAAGTTTGGAAACCCTAATGGAACCGAAGAAGACACTGTCAAAATAGTGGGAATTGCTGCCGGTGCTTATCATAGTCTTGCTCTTGCAGATGATGGAGCTGTTTGGTGTTGGGGTTACAATATCTATGGTCAACTTGGTATAAATGGAGAGGACTTGCATGATGATAAATATGCTGTTGGAGACAATTCTCTAGTTCCCGTCGTACTGAACAAATTTCTTGAATTGCACCCCCCAGATTCCTCAACAGCTGTGTCTGAAGAAGAAGGTAAAACATCACTTAAGATATGTGCTGTCAAAGCTGGAGGAATGACATCTCTGGCCATTGATAATGGTGGGATGCTGTGGATGTGGGGAAACTGCCCACAACAAAGCAAAGAAGGTGGGTTATCTTTTGTTAGCAGTTTCACTCCAACACCAGTTTGGGATTTTCATGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATATTGTAGCACTGGTTAGTGCTGGAGAATTGTATAGTGGTGAAGATCTAGTGTGCTACTCTTGGGGTTATAACAGCCATGGCCAATTAGGCTTGGGGGATAGGGAGAGCAGGCTGCATCCAGAAGCGGTTAAAACATTTGATAAGGAATCCCTGTCGACAATTTATGGTGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCACAAAAAGAACCCTGGTGACACATTAGAAAGCACGTGCTGGACATTTGGTCTTGGAAATAATGGCCAACTTGGGCATGGAACAACTCAAAGCACATCATTTCCCACACTTGTTAAAGAATTGCCACAAAATGTAGATCTTATTAGTGTCGACTGTGGCTTGTTTCATACAAGTGTTGTTTCCTCTGCTGGGGATGTGTGGTCTTGGGGAATGGAGAAGGGCCTTGGCTTATGCCCTGATGCTAGTCGTGCTGAAACAGATTCTGGTGATGCACTCTCTCCCCGTCTTATGTCATGCAAGCCTTATCAACCTAAATTTCCTGATCCAATTAAAGTCGCGTGTGGGGCTGCACATACTGTTATTGTTGCACAGGAGGGATATAGAATATGGTCTTGGGGTAGAGGAAAGAGTGGCGTTCTTGGAAATGGTAAAGGAGTAGACTGTTACACTCCCACCATTGTGCTATGGCCTCCAATGATGGAGGATTTCAAAGATGAGGAAGTAAAAAGCTCTGTTGAGAAAGATAAGGTCAGAGAAAAGGAGACTGAAAAAATAACAGAAACAGATGAGAAATTATCCTCGGTATTGAATGAGCTGAAGCTGCTTCAAACAAAACAGTCTATAATGGAAAAATATGCGAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAGCAAGATATCCCTGCTTCGTTGCGGAATTCAGGTTCATTTGACATTGCAATAGAATGGGAGAAGATGTTAGAGGCAGCAGATCATAGGAAGCTAGTTAGGTTGGAAATGTTTTACCGTGACATGCTTGCTGGAGTGAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTATAAAGGAGTGTCTCCAATCTACTTCAGGGGCGAAAAATTAG 1752 0.4372 MEDAGKYLNSGDLSRKVVDVDAGEAHTLLLTGDGSVYCWGRGMFGRLGIGSEKDELFPVQVKFGNPNGTEEDTVKIVGIAAGAYHSLALADDGAVWCWGYNIYGQLGINGEDLHDDKYAVGDNSLVPVVLNKFLELHPPDSSTAVSEEEGKTSLKICAVKAGGMTSLAIDNGGMLWMWGNCPQQSKEGGLSFVSSFTPTPVWDFHGHTVVKVACGNEHIVALVSAGELYSGEDLVCYSWGYNSHGQLGLGDRESRLHPEAVKTFDKESLSTIYGVACGAFHTALLTHKKNPGDTLESTCWTFGLGNNGQLGHGTTQSTSFPTLVKELPQNVDLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASRAETDSGDALSPRLMSCKPYQPKFPDPIKVACGAAHTVIVAQEGYRIWSWGRGKSGVLGNGKGVDCYTPTIVLWPPMMEDFKDEEVKSSVEKDKVREKETEKITETDEKLSSVLNELKLLQTKQSIMEKYASILHGSIFGKPFDEQDIPASLRNSGSFDIAIEWEKMLEAADHRKLVRLEMFYRDMLAGVKDELMKRRIKEIIKECLQSTSGAKN* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1098 583 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 212 222 IPR000408 -
Apr5g1098 583 SUPERFAMILY RCC1/BLIP-II 269 440 IPR009091 -
Apr5g1098 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 234 288 IPR000408 -
Apr5g1098 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 173 225 IPR000408 -
Apr5g1098 583 Gene3D - 5 232 IPR009091 -
Apr5g1098 583 Gene3D - 233 479 IPR009091 -
Apr5g1098 583 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 579 - -
Apr5g1098 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 411 IPR000408 -
Apr5g1098 583 SUPERFAMILY RCC1/BLIP-II 14 325 IPR009091 -
Apr5g1098 583 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 79 89 IPR000408 -
Apr5g1098 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 93 172 IPR000408 -
Apr5g1098 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 349 IPR000408 -
Apr5g1098 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 92 IPR000408 -
Apr5g1098 583 Pfam Regulator of chromosome condensation (RCC1) repeat 33 89 IPR000408 -
Apr5g1098 583 Pfam Regulator of chromosome condensation (RCC1) repeat 92 169 IPR000408 -
Apr5g1098 583 Pfam Regulator of chromosome condensation (RCC1) repeat 237 285 IPR000408 -
Apr5g1098 583 Pfam Regulator of chromosome condensation (RCC1) repeat 299 345 IPR000408 -
Apr5g1098 583 PRINTS Chromosome condensation regulator RCC1 signature 35 51 IPR000408 -
Apr5g1098 583 PRINTS Chromosome condensation regulator RCC1 signature 95 111 IPR000408 -
Apr5g1098 583 PRINTS Chromosome condensation regulator RCC1 signature 212 228 IPR000408 -
Apr5g1098 583 PRINTS Chromosome condensation regulator RCC1 signature 339 357 IPR000408 -
Apr5g1098 583 PRINTS Chromosome condensation regulator RCC1 signature 408 429 IPR000408 -
Apr5g1098 583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 4 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1098 Apr-Chr5 15603491 15609372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1098 - - gmx:100815199 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1098 5 15603491 15609372 Apr5g1098 5 15603491 15609372 ECH