Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1097 ATGGACTCTCTTGCCTCAAGTTCTAATTCTCCATTAAACCACAACAATCACCGCCACAACCACCACCACCATTACCCTCGGCTCAAACCGAGCCAACCCATTTCAGACCGAATAGTTCGCGCCCTCCGCCACCACCTCCGTCTCCTCCACCGTTCTGGCTCCACCTTCTTCATATTCGGTGCCACCGGAAACGTGTACACAGTAACCTTATCAAGCAGCCCTTCATGCACGTGCCCTGACCGCACCACCCCATGCAAACACATCCTTTTCGTTTTGATTCGAGTTTTGGGTGTGTCCCTCGATGATGTGTGTCTCAGGAGAAGAACCCTTCGTCCCTGCCAGCTTCAACGTCTTCTCAACATGCCCACGTTGGGAGAGGCAGTGGCAGGGGGCAACCTGCGACAAAGGTTTCACCAATTGTTCTTTGACAAAGGGTCAACGAGCGCAACAATAGAGATGGAGGATGGTGCCACGTGTCCTATTTGTCTTGAGGAAATGGGTAGGGAAGAGAAGTTGGTGGCATGTGGAACATGCCGTAACCCTATTCATGAAGAGTGTTTGATGAGGTGGAAGAGAAGCAAGGGAAGAAGAACAGCTAGTTGTGTGATTTGTAGAGCGAGATGGAGGGATAGAGCGGAGCAAGATAAGTATCTGAATCTCTCTGCATATGTTAGCGAAGATGACGTGGCACATCTTGGTGGGGGTCTCTGCACTGGTTAA 720 0.5083 MDSLASSSNSPLNHNNHRHNHHHHYPRLKPSQPISDRIVRALRHHLRLLHRSGSTFFIFGATGNVYTVTLSSSPSCTCPDRTTPCKHILFVLIRVLGVSLDDVCLRRRTLRPCQLQRLLNMPTLGEAVAGGNLRQRFHQLFFDKGSTSATIEMEDGATCPICLEEMGREEKLVACGTCRNPIHEECLMRWKRSKGRRTASCVICRARWRDRAEQDKYLNLSAYVSEDDVAHLGGGLCTG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1097 239 PANTHER - 1 229 - -
Apr5g1097 239 MobiDBLite consensus disorder prediction 1 30 - -
Apr5g1097 239 Pfam Ring finger domain 158 205 IPR001841 -
Apr5g1097 239 SUPERFAMILY RING/U-box 151 211 - -
Apr5g1097 239 Pfam SWIM zinc finger 66 94 IPR007527 GO:0008270
Apr5g1097 239 ProSiteProfiles Zinc finger RING-type profile. 159 205 IPR001841 -
Apr5g1097 239 ProSiteProfiles Zinc finger RING-CH-type profile. 151 211 IPR011016 GO:0008270
Apr5g1097 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 222 IPR013083 -
Apr5g1097 239 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 1 229 IPR039903 GO:0061630
Apr5g1097 239 ProSiteProfiles Zinc finger SWIM-type profile. 66 96 IPR007527 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1097 121 209 Glycosyltransferase AT5G09870 30.435 3.16e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1097 - - var:108321788 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1097 5 15600559 15601423 Apr5g1097 5 15600559 15601423 ECH