Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1082 ATGAGCGTTTCTCATTTCGCGCTTGTATCGTCTTGTCGTCCACGCTTCGTCCCTTCGCTGTCGTGTGCTTCCACCATCCTTCGGTCTCGCATACGGTGTTGCACTACTCTCTCCGCTACTTCTTCAGAGGCTCCCACTCCAACCTCCGTAAAGAAACGTATGGTGTCGGGGGTTCAGCCTACGGGTTCAATTCACCTTGGAAACTATTTTGGCGCCATTAAGAATTGGGTTGCTCTTCAGAATGCATACGATACACTTTTCTTCATTGTGGATCTGCATGCGATTACATTACCTTATGACACACAACAGTTATCTAAAGCTACAAGATCAACTGCAGCCATTTACCTGGCATGTGGAGTGGACCCCTCAAAGGCTTCGGTATTTGTACAGTCTCATGTTCGAGCACATGTGGAATTGATGTGGCTGCTGAGTTCCACAACACCAATTGGTCGGCTGAACAGAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGGGATGAAGAAGTTGGGGTTGGCCTTCTGACTTATCCCGTTTTGATGGCTTCTGATATACTGCTATATCAGTCTGATTTTGTCCCTGTTGGAGAAGATCAAAAGCAACATTTGGAGTTGACACGCGACTTAGCTGAACGGGTTAATTATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGTCGAGGTGGTACTATATTTAAGGTTCCCGAGCCCCTTATACCTCCAACAGGAGCCCGAATTATGTCCCTAACTGATGGCCTGTCTAAGCTTATAGCAAACAAGATCAAACGCTGCAAAACTGATTCATTTCCAGGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTGCAGGAAAGACAAAAGAGGAAGTTGAGCAGGAGTGCCAAAACATGAATTGGGGCACATTCAAAGTTCTTCTAACAGATGCCTTGATTGACCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCAGATTCAGGTTATTTAGATGAAGTTTTGGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATAATACACTTCATAATGTTTACCAAGCAATGGGATTTTTGAGGAGACGGTGA 1125 0.4436 MSVSHFALVSSCRPRFVPSLSCASTILRSRIRCCTTLSATSSEAPTPTSVKKRMVSGVQPTGSIHLGNYFGAIKNWVALQNAYDTLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGRLNRMIQFKEKSRKAGDEEVGVGLLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNYLYGGRKWKKLGGRGGTIFKVPEPLIPPTGARIMSLTDGLSKLIANKIKRCKTDSFPGLEFDNSERPECNNLLSIYQLIAGKTKEEVEQECQNMNWGTFKVLLTDALIDHLHPIQVRYEEIMSDSGYLDEVLAQGARNAADIADNTLHNVYQAMGFLRRR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1082 374 CDD TrpRS_core 53 322 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Apr5g1082 374 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 25 370 - -
Apr5g1082 374 PANTHER BNAA04G15180D PROTEIN 25 370 - -
Apr5g1082 374 TIGRFAM trpS: tryptophan--tRNA ligase 51 370 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Apr5g1082 374 Gene3D - 247 337 - -
Apr5g1082 374 SUPERFAMILY Nucleotidylyl transferase 53 370 - -
Apr5g1082 374 Hamap Tryptophan--tRNA ligase [trpS]. 51 371 IPR024109 GO:0004830
Apr5g1082 374 Pfam tRNA synthetases class I (W and Y) 53 325 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Apr5g1082 374 PRINTS Tryptophanyl-tRNA synthetase signature 64 80 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Apr5g1082 374 PRINTS Tryptophanyl-tRNA synthetase signature 114 133 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Apr5g1082 374 PRINTS Tryptophanyl-tRNA synthetase signature 191 212 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Apr5g1082 374 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 60 69 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Apr5g1082 374 Gene3D HUPs 55 357 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1082 K01867 - gmx:100780447 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1082 5 15470213 15478659 Apr5g1082 5 15470213 15478659 ECH