Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1075 ATGGTGGTTTCCGACAGTCCCAACGGTGGTTCTACGCCGCCACCGCCACCGCCACCGCAACAAGAACAAACCAACAAATACGGCTTGACAAAACCTATCTCCCTTGCCGGTCCCACCGACGCTGATTTACAGCGTAACCTCGAATTGGAGAAGTTTTTGCTTGATTCGGAGCTTTATGAGAGCAATGAAGAAGCCGCAAGCAGACAAGAGGTTCTTCGACGCCTTGATCAGATTGTGAAAAGCTGGGTGAAGCAGTTGACGCGGCAGCGTGGCTACACGGATCAGATGGTTGAGGATGCAAACGCTGTCATTTTCACTTTTGGTTCTTATCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCGTATGTGAATCGAGAGGAAGACTTCTTTATCATTTTGCATAACATCCTGGCTGAAATGGAAGAAGTTACTGAACTTCAACCAGTTCCTGATGCACACGTCCCAGTAATGAAATTCAAATTTCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCTCTTTTGGTTGTGCCAGAAGACCTAGATATCTCACATGGTTCAGTGCTGTATGACGTTGATGAACCAACTGTCCGAAGTCTTAATGGCTGTCGGGTGGCAGATCAAATTCTTAAACTTGTCCCAAATGTTGAGCACTTCCGAACTACATTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTTCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATTTGCCAGCTTTACCCCAATGCAATCCCTAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAAAATGAACTGGGTTTCCCTGTATGGGATCCTCGTAGAAATCCCCGAGACAGATTTCACATTATGCCGATAATTACTCCTGCATACCCGTGCATGAATTCAAGCTACAATGTCTCAGCAAGCACTCTTCGTGTTATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGAGCTGAATAAAGCCCAATGGATTGCACTTTTCCAGCCATATGTCTTTTTTGAAGCATACAAAAACTATTTACAAGTGGACATAATTGCATCAGATGCTGACGATTTACTAGCATGGAAGGGTTGGGTAGAATCTCGGTTGAGACAACTTACCCTGAAGATAGAGCGAGATACAAATGGGATGCTACAGTGTCATCCTTACCCACACGAGTATATAGACACATCCAAACCTTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAAGGGCAGCAATTTGATATACGTGGAACGGTTGATGAATTCAGACAAGAAATAAATATGTATATATACTGGAAACCAGGGATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAACTCCCTCCATTTGTTTTTCCTGATGGTTACAAACGCACTCGAATGCCAAGGCATATAAGCCTTCCGGCTGAAAAACCAGGTGATGATGCCACAAAATGCTACTCTGGATCTGGGTCTTCTGAAAGAAACATCAAGAGGAAAAATTACCCTGAAATGATGGATAGGAAGCCAGACAAACCAGAGAAGCGGGCATCTATTAGCCCACAGAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTACAGCTCACGTGAATATTGAGGGTATTGAAGGGGTTAGGTTAGCTAGTTCAACTACCAGGGATGCTGACCGCATTTGTGAAATTAAGTCATCTGATGCACTTCCAGGAAGTGGACTAAGTACTGAGGTTACTGACATGCAGATTAGTGAACCTGGCTTTGTTGACTCCTCACATGATAGGCTGAAATCAAGAAGTGTAGAAATTCTGAATGAGAATGGGGTCATCAATGGGGACAAAACTCAGGATCTGCCTTTAAGTTGCTTGAAAAGTGCAGAAACAGAATCTACCAAAAGCTTGCCAAACTGTCAAGAAGGCGTCGTTGATATGGATCAACAACTAGACAAAGCGTGTAATTTCATCACAAGGGCTGAATGTTCAGATTATGTACCAAGTGCCAGTTCCCAGAACCTCAATTGCGAGATGTCAGGCTCAGAAGTGCTGTATAAATTGGAGACAAGGCTAGGAGGATGA 2208 0.4325 MVVSDSPNGGSTPPPPPPPQQEQTNKYGLTKPISLAGPTDADLQRNLELEKFLLDSELYESNEEAASRQEVLRRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRRNPRDRFHIMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIELNKAQWIALFQPYVFFEAYKNYLQVDIIASDADDLLAWKGWVESRLRQLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPPFVFPDGYKRTRMPRHISLPAEKPGDDATKCYSGSGSSERNIKRKNYPEMMDRKPDKPEKRASISPQRLECVSPESCTSKSGGTAHVNIEGIEGVRLASSTTRDADRICEIKSSDALPGSGLSTEVTDMQISEPGFVDSSHDRLKSRSVEILNENGVINGDKTQDLPLSCLKSAETESTKSLPNCQEGVVDMDQQLDKACNFITRAECSDYVPSASSQNLNCEMSGSEVLYKLETRLGG* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1075 735 MobiDBLite consensus disorder prediction 1 40 - -
Apr5g1075 735 Gene3D Beta Polymerase, domain 2 60 216 IPR043519 -
Apr5g1075 735 SUPERFAMILY PAP/OAS1 substrate-binding domain 223 372 - -
Apr5g1075 735 Pfam Poly(A) polymerase predicted RNA binding domain 375 432 IPR007010 GO:0003723|GO:0043631
Apr5g1075 735 Pfam Poly(A) polymerase predicted RNA binding domain 437 507 IPR007010 GO:0003723|GO:0043631
Apr5g1075 735 SUPERFAMILY Nucleotidyltransferase 24 221 IPR043519 -
Apr5g1075 735 CDD NT_PAP_TUTase 68 222 - -
Apr5g1075 735 PANTHER NUCLEAR POLY(A) POLYMERASE 4 4 608 - -
Apr5g1075 735 MobiDBLite consensus disorder prediction 538 560 - -
Apr5g1075 735 Pfam Nucleotidyltransferase domain 101 177 IPR002934 GO:0016779
Apr5g1075 735 MobiDBLite consensus disorder prediction 514 578 - -
Apr5g1075 735 Gene3D Poly(A) polymerase predicted RNA binding domain 374 490 - -
Apr5g1075 735 Gene3D - 28 370 - -
Apr5g1075 735 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 375 501 IPR011068 GO:0003723|GO:0016779|GO:0031123
Apr5g1075 735 Pfam Poly(A) polymerase central domain 28 371 IPR007012 GO:0004652|GO:0043631
Apr5g1075 735 PANTHER POLY A POLYMERASE 4 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1075 Apr-Chr5 15417616 15423716 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1075 K14376 - gmx:100802620 1305.81