Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1063 ATGGCATCTTCTAAGAGGTCGAATGATAGGAATGCAGTGGAACCAAATGGGAAAGGGAAACGCCAAAAGCCTTCAGGTGGTTTTTCACCGTTGGATGTTTCTCCTGGTAGCCTTGTATTCCGTTTGCTCTGTCCTGTTTCTAGAATTGGTGGTGTTATTGGTAAAGGCGGTGCAATCATATCACAAATTCGTCAAGATACTGGTGTGAAGGTTAAGATTGAGGAACCTGTTCCTGGGTGTGATGAAAGGGTTATCACTATCTCAGGTTCTGATAAAGAGGCCGAAGAAGATGCTGCTGAGCAGGGAAGGGAGGTTAATGATGAAGAGGCTGGAAGCGAGGGGAAGGATGAGGAAGCGAATGATCGTGGTGGTGGCGATGGTAATGAAGATAAAGATTCTGTTCCTCCTGTTGAAGACTCACGGTGTGAGAAGGGAAATTCGTCGATTCGGAAGGCTATATCACTAGTTTTTGAGAGGATGGTTGAGGGAGTAGAGGAGGCAACTGAAGGGGATGAAGAAAGTAATAATAAACCTTCTTCCTTTGTTCTTAGATTACTTGTTCTTTCTAATCAAGTTGGCTGCCTTTTGGGAAAGGGTGGCAGTGTGATAAAGAAGATGTCAGCTGACAGTGGAGCGCAGATTCGTATCCTCCCTAGAGACAAACTTCCCGTGTGCGCATCAGCTTCTGATGAGATAGTTCAGATCACAGGGGGTGTAGAAGTTGTCCGGAAGGCTCTTCAATCTGTCTCTCAACAGCTTTTGGAAAATCCGCCTCGGGATCCTGAATCCCTTTCTGCCCATTTTTCTGGGCCGTCATCTCATTCATTTGGTCAATTCCCACCACACAACCGTTCATTTGCTGCCCAAGGAGCATCTCTTGCTCCTGGGCCCCATGACATTTCTGTTTTTCATTCTGCTCCTCCTTTGATTCCCATTCCTAAATTTCATGAAGGTGCCATCCGTGGTCGCATGAGGCCTTCCCAGGAAATGCTTACTTTTCGTTTATTGTGTCCTTCTGAGAGGGTAGGGAATCTAATTGGTAAAGGTGGGGCAATCATAAAGACCGTGCAGCAAGAGACAGCTAGTGAAATCAAAGTTCTAGAAGGCACTCCGGATTCAGAGGACTGTGTTATTGTCATATCTGGTCCAGCGCACCCAGATGATAGGATATCTCCTGTGCAAGATGCTGTATTTCGTGTGCTAACTAGAATAGCCAAAGCAATACCTGATATCAAAGAGCATAGTATGTTAGCAAGGTTTCTTGTTTCTTCCAATCAAACCGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACAGAAATGAGGAAGTTATCGGGGGCTCATATTCGTATATTAGCAAAGGATAAGGTTCCAAAATATGCTTCAGAAGATGAAGAAGTAATTCAGGTAAGTGGAGAAATTGAGGCAGTGCATGATGCTCTTTTGCAAATAACCACTAGATTAAAACATCATTTCTTTCGTGATGCATATCCATCTATCAATTATCCTTCAAATTCTCCATTTCTGGATCAACTTCCACCATTCCCACCTTATTTAGGAAGACGGGGACTTTCACCTCCTGGAATGTATTCTGACCTAGGTCCTCTGCCACCACATGGTGGTTTTCCACTTGATGACCGCCCTCCTTTTGTGAATAATATACATAGACCAGGCATTCCTCCCCACATATCTGAAAGGAAGCCTTGGGGTCCTCAGGGGTTACATGAAGGTGGTGCACCCGTTGGCTTGCCAGACTTTCCAGGTGGTCCTCCTAGAAGAATTTCAGGATTTGCCGGGGGGAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCGCTGGTGCCTGTAATATATGGAGAAGATGGTGAATGCCTGAAACAAATACTTCAGATCTCTGATGCAAATATTACTATTACTGATCCAAAGCCTGGAGCTGTGGAAACTAAAATCATAATATCTGGAACCCCTGAGCAAACTCATGCTGCACAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTGGTTGA 2049 0.449 MASSKRSNDRNAVEPNGKGKRQKPSGGFSPLDVSPGSLVFRLLCPVSRIGGVIGKGGAIISQIRQDTGVKVKIEEPVPGCDERVITISGSDKEAEEDAAEQGREVNDEEAGSEGKDEEANDRGGGDGNEDKDSVPPVEDSRCEKGNSSIRKAISLVFERMVEGVEEATEGDEESNNKPSSFVLRLLVLSNQVGCLLGKGGSVIKKMSADSGAQIRILPRDKLPVCASASDEIVQITGGVEVVRKALQSVSQQLLENPPRDPESLSAHFSGPSSHSFGQFPPHNRSFAAQGASLAPGPHDISVFHSAPPLIPIPKFHEGAIRGRMRPSQEMLTFRLLCPSERVGNLIGKGGAIIKTVQQETASEIKVLEGTPDSEDCVIVISGPAHPDDRISPVQDAVFRVLTRIAKAIPDIKEHSMLARFLVSSNQTGCLLGKGGSIITEMRKLSGAHIRILAKDKVPKYASEDEEVIQVSGEIEAVHDALLQITTRLKHHFFRDAYPSINYPSNSPFLDQLPPFPPYLGRRGLSPPGMYSDLGPLPPHGGFPLDDRPPFVNNIHRPGIPPHISERKPWGPQGLHEGGAPVGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1063 682 CDD PCBP_like_KH 332 401 - -
Apr5g1063 682 ProSiteProfiles Type-1 KH domain profile. 330 397 - -
Apr5g1063 682 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 328 416 IPR036612 GO:0003723
Apr5g1063 682 MobiDBLite consensus disorder prediction 82 145 - -
Apr5g1063 682 MobiDBLite consensus disorder prediction 266 281 - -
Apr5g1063 682 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 607 676 IPR036612 GO:0003723
Apr5g1063 682 ProSiteProfiles Type-1 KH domain profile. 180 249 - -
Apr5g1063 682 Gene3D K Homology domain, type 1 178 258 IPR036612 GO:0003723
Apr5g1063 682 Gene3D K Homology domain, type 1 413 491 IPR036612 GO:0003723
Apr5g1063 682 Pfam KH domain 332 384 IPR004088 GO:0003723
Apr5g1063 682 Pfam KH domain 609 672 IPR004088 GO:0003723
Apr5g1063 682 Pfam KH domain 183 249 IPR004088 GO:0003723
Apr5g1063 682 Pfam KH domain 419 484 IPR004088 GO:0003723
Apr5g1063 682 Pfam KH domain 40 100 IPR004088 GO:0003723
Apr5g1063 682 MobiDBLite consensus disorder prediction 1 35 - -
Apr5g1063 682 ProSiteProfiles Type-1 KH domain profile. 607 671 - -
Apr5g1063 682 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 415 497 IPR036612 GO:0003723
Apr5g1063 682 MobiDBLite consensus disorder prediction 86 145 - -
Apr5g1063 682 CDD KH-I 609 672 - -
Apr5g1063 682 CDD PCBP_like_KH 182 250 - -
Apr5g1063 682 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 3 543 - -
Apr5g1063 682 CDD PCBP_like_KH 39 90 - -
Apr5g1063 682 Gene3D K Homology domain, type 1 328 407 IPR036612 GO:0003723
Apr5g1063 682 Gene3D K Homology domain, type 1 37 109 IPR036612 GO:0003723
Apr5g1063 682 MobiDBLite consensus disorder prediction 252 281 - -
Apr5g1063 682 ProSiteProfiles Type-1 KH domain profile. 415 484 - -
Apr5g1063 682 Gene3D K Homology domain, type 1 606 679 IPR036612 GO:0003723
Apr5g1063 682 SMART kh_6 179 254 IPR004087 GO:0003676
Apr5g1063 682 SMART kh_6 36 106 IPR004087 GO:0003676
Apr5g1063 682 SMART kh_6 606 676 IPR004087 GO:0003676
Apr5g1063 682 SMART kh_6 414 489 IPR004087 GO:0003676
Apr5g1063 682 SMART kh_6 329 409 IPR004087 GO:0003676
Apr5g1063 682 CDD PCBP_like_KH 419 485 - -
Apr5g1063 682 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 176 258 IPR036612 GO:0003723
Apr5g1063 682 ProSiteProfiles Type-1 KH domain profile. 37 102 - -
Apr5g1063 682 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 543 - -
Apr5g1063 682 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 32 99 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1063 Apr-Chr5 15298515 15303296 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1063 K21444 - gmx:100777433 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1063 5 15298515 15303296 Apr5g1063 5 15298515 15303296 ECH