Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1053 ATGGCATCGTTCCGTCGGACTCTGTCGCCGGCGTATCACGATCGCCAGTACCTAAACGCTGCGTTTTCGGTTTCTTCGCCTTCACACAAGCTTTCATCCTCCAACACAAAGTACTCGTCGCCGCTGCCGGCGCTCGCCGCCGCGTTCAGGCGACTCATCGGCGGCGTATTCATGCGACGGTACGGTCGGAAAGGTCTATGGAGACGCGCCGTGTTCCGGTGCTTGCTTTGTTTCTTTGTAGGGTTTTTGTTAGGCATGTTCCCTTTCGGTCACGTGGTGGAGGACATTCGCTCACAGGATATCTCTTTCGAGATGAAGCCGCCGCACGCGAATGCGCAACTGCTTCGTCAAGATCGCGTTCTGAAGAATCGCGTTGAGGAGGATGAGGAGGGTTTCGTGGTGGATCCGGTGAGTCTGAGTGCGGAGAAGCGGAGTTTGGCGACGGAGAAGTTTGATTTCGTGCCGAGGAAGCAGTTGATTGTAGTGACTCCTACCTATGGACGCGCTTTTCAGGCGTATTTCTTGAATAGGTTGGGTCAGGTGTTGCGTTTGGTGCCGCCGCCGGTTCTGTGGATTGTGGTGGAAATGAATTCGGCATCGATGGAGACTGCGGCAGTACTTAGGAAAACGGGTATGATGTATAGGCATTTGGTGTGTGCTAAGAATTTGACGGATGTGAAGGATAGAGGGGTTCATCAGAGGAACACAGCGTTGGAGCACATTGAGCGTCATAGACTTGATGGCATTGTTTACTTTGCGGATGATGATAATGTGTATTCTCTCGAGTTGTTTGACGTCTTGAGAGATATTAGCCGCTTTGGGACTTGGCCTGTAGCCATGCTTTCACCGAGCAAGAACAAGGCCATTTTGGAGGGTCCTGTATGCAATGCAAGCCAAGTGATTGGATGGCATACAAATGAGAAAAGTAGAAGACTTCGCAGATTTCATGTTGATATGTCTGGCTTTGCATTTAACAGCACAATCTTGTGGGATCCAAAAAGATGGCGACGCCCTACTTCAACTCCTATACGACAGCTCGACACAGTGAAGGAGGGTTTTCAAGAAACCACCTTCATTGAACAATTGATGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGGTGTTCAAAAATATTGAATTGGCATCTCCATTTGGATGCTCATAATATAGTTTACCCTAAAGGTTGGATGCTTCAGAAAAACCTAGATGCTGTCATACCTGTCAATTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGGTGCATCAGTTAGCCACCAGTGGCACTAATGCATTACGTCGCCGGGCAAGACAGGAACAGGTTACTGGTTTTGTTTCCCGAATTCTCTTGCACGAAAAAATATTTGCGGGGGCAAATTTTTTGCTGTTGTAA 1401 0.4839 MASFRRTLSPAYHDRQYLNAAFSVSSPSHKLSSSNTKYSSPLPALAAAFRRLIGGVFMRRYGRKGLWRRAVFRCLLCFFVGFLLGMFPFGHVVEDIRSQDISFEMKPPHANAQLLRQDRVLKNRVEEDEEGFVVDPVSLSAEKRSLATEKFDFVPRKQLIVVTPTYGRAFQAYFLNRLGQVLRLVPPPVLWIVVEMNSASMETAAVLRKTGMMYRHLVCAKNLTDVKDRGVHQRNTALEHIERHRLDGIVYFADDDNVYSLELFDVLRDISRFGTWPVAMLSPSKNKAILEGPVCNASQVIGWHTNEKSRRLRRFHVDMSGFAFNSTILWDPKRWRRPTSTPIRQLDTVKEGFQETTFIEQLMEDESQMEGSPPGCSKILNWHLHLDAHNIVYPKGWMLQKNLDAVIPVNLPIFGIGSSLNRWVHQLATSGTNALRRRARQEQVTGFVSRILLHEKIFAGANFLLL* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1053 466 Pfam Glycosyltransferase family 43 178 386 IPR005027 GO:0015018|GO:0016020
Apr5g1053 466 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 158 405 IPR029044 -
Apr5g1053 466 CDD GlcAT-I 159 388 IPR005027 GO:0015018|GO:0016020
Apr5g1053 466 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 406 IPR005027 GO:0015018|GO:0016020
Apr5g1053 466 PANTHER GLYCOSYLTRANSFERASES 1 406 - -
Apr5g1053 466 SUPERFAMILY Nucleotide-diphospho-sugar transferases 158 403 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1053 Apr-Chr5 15167162 15171475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1053 1 407 Glycosyltransferase AT1G27600 62.530 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1053 K20869 - gmx:100809892 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1053 5 15167162 15171475 Apr5g1053 5 15167162 15171475 ECH