LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1049	ATGGCCGTTTCAACAACTCTCTCCGGTGCCAAATTGGAGGCTGTATTGCTCCAATGCTCTTCTTGTTCTTCTTCTTCAAGGGCATCATTCCCTGCTACCCATTTATCAGTTCTCCGCACAAACAGAAGGACCCTCTTTCAGAAAGGGGCTATTCGCTGCGATGTTCAATCCTCTGATGAAATTCTTAAGAGGGATGGTTCTAACACTCTCTCCGCTCTTGAGCAGCTCAAGACTTCTGCAGCTGATAGGTATACAAAGGAAAGGAGCAGCATTGTTGTCATTGGGCTCAGTGTGCACACTGCACCTGTGGAAATGCGTGAAAAACTTGCCATTCCTGAAGCAGAATGTCCTAGAGCTATAGAAGAGCTGTGTAGTCTTAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGTAACCGAATGGAGATATATGTTGTTGCTCTGTCCCAACACCGTGGTGTAAAAGAAGTCATGGAATGGATGTCAAAAACAAGTTCCATCCCTGTTTCAGAGCTTTGTGAGCACCGGTTTTTACTGTACAACAAAGATGCCACGCATCATATTTTTGAAGTATCAGCTGGTCTTGACTCTCTTGTTTTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTCAAAGTTGCCCAGGGAGTTAGCGGCTTTGGGAGATACATAAGTGGGCTATTCAAGCATGCAATTACTGTTGGGAAAAGGGTTAGAACTGAGACTAATATTGCTGCTGGGGCGGTTTCTGTGAGTTCAGCTGCTGTTGAATTGGCCTTTATGAAGCTACCTAAAGCCTCACATGATAACGCCAGGATGTTGGTTATTGGTGCTGGCAAGATGGGAAAGCTTGTGATCAAGCATTTGGTGGCAAAAGGTTGGAAAAAGATGGTTGTTGTCAATAGAACTGAGGAGAGAGTTGCTGCGATTCACGAAGAACTGAAGGATGTTGAGATAATCTACAAACCCCTTTCAGAAATGATCACCTGTGCTGGTGAAGCAGATGTAGTCTTCACCAGTACAGCATCAGAAAACCCGTTATTCTTGAAAGATCATGTGAAGGACCTTCCTCCTGTAAGTCAAGTTGTTGGAGGTCGTCGCTTTTTCATTGACATATCTGTTCCTCGGAATGTGGGTTCGTGTGTCTCAGATCTTGAGTCTGTGCGAGTTTACAATGTTGATGACCTCAAAGAGGTTGTGGCTGCCAATAAAGAGGATCGCGTGCGAAAAGCAATGGAAGCACAGGCAATCATTGCTGAAGAATCTAAACGATTTGAAGCATGGAGGGATACACTGGAAACTGTTCCAACTATTAAGAAATTGAAGAATTATGCTGACAGAATCAGGGTTGCTGAGCTTGAGAAATGCTTAGGTAAGATGGGTGATAATATATCAAATAAAACTAGGAAAGCTGTGGATGATCTTAGTCGGGGTATTGTGAATAAGTTGCTTCATGGTCCAATGCAACATTTAAGGTGTGATGGGAGTGACAGCCGGACTCTAAGTGAGACACTAGAGAACATGCATGCTTTAAATAGGATGTTCAACCTTGAGACTGAAATATCCGTTTTAGAGCAGAAAATTCGAGCGAAGGTTGAAAAAAACCAGAAATGA	1620	0.4346	MAVSTTLSGAKLEAVLLQCSSCSSSSRASFPATHLSVLRTNRRTLFQKGAIRCDVQSSDEILKRDGSNTLSALEQLKTSAADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAECPRAIEELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSIPVSELCEHRFLLYNKDATHHIFEVSAGLDSLVLGEGQILAQVKQVVKVAQGVSGFGRYISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELAFMKLPKASHDNARMLVIGAGKMGKLVIKHLVAKGWKKMVVVNRTEERVAAIHEELKDVEIIYKPLSEMITCAGEADVVFTSTASENPLFLKDHVKDLPPVSQVVGGRRFFIDISVPRNVGSCVSDLESVRVYNVDDLKEVVAANKEDRVRKAMEAQAIIAEESKRFEAWRDTLETVPTIKKLKNYADRIRVAELEKCLGKMGDNISNKTRKAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFNLETEISVLEQKIRAKVEKNQK*	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1049	539	Hamap	Glutamyl-tRNA reductase [hemA].	90	517	IPR000343	GO:0008883\|GO:0033014\|GO:0050661
	Apr5g1049	539	ProSitePatterns	Glutamyl-tRNA reductase signature.	187	210	IPR018214	GO:0008883
	Apr5g1049	539	Coils	Coil	516	536	-	-
	Apr5g1049	539	Pfam	Glutamyl-tRNAGlu reductase, N-terminal domain	94	244	IPR015895	GO:0008883\|GO:0033014\|GO:0050661
	Apr5g1049	539	Gene3D	-	89	249	IPR036343	GO:0008883\|GO:0033014\|GO:0050661
	Apr5g1049	539	TIGRFAM	hemA: glutamyl-tRNA reductase	91	500	IPR000343	GO:0008883\|GO:0033014\|GO:0050661
	Apr5g1049	539	Coils	Coil	302	322	-	-
	Apr5g1049	539	Pfam	Glutamyl-tRNAGlu reductase, dimerisation domain	415	519	IPR015896	GO:0008883\|GO:0033014\|GO:0050661
	Apr5g1049	539	PANTHER	GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC	1	539	-	-
	Apr5g1049	539	CDD	NAD_bind_Glutamyl_tRNA_reduct	91	413	-	-
	Apr5g1049	539	Pfam	Shikimate / quinate 5-dehydrogenase	261	401	IPR006151	-
	Apr5g1049	539	Gene3D	-	250	402	-	-
	Apr5g1049	539	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	249	409	IPR036291	-
	Apr5g1049	539	SUPERFAMILY	Glutamyl tRNA-reductase catalytic, N-terminal domain	90	246	IPR036343	GO:0008883\|GO:0033014\|GO:0050661
	Apr5g1049	539	SUPERFAMILY	Glutamyl tRNA-reductase dimerization domain	413	517	IPR036453	GO:0008883\|GO:0033014\|GO:0050661
	Apr5g1049	539	PANTHER	GLUTAMYL-TRNA REDUCTASE	1	539	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1049	Apr-Chr5	15119280	15122173	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1049	K02492		-	gmx:100782247	870.537

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g1049	5	15119280	15122173	Apr5g1049	5	15119280	15122173	ECH