Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1048 ATGGGTACTGGTTGGAGAAGAGCCTTTTGCACCCGCGACCCTGAATCCACCATATCGGATAAGCAACCAAGAACCCCCAGCCCAACCCCAAGCCCAAGAACCTGCGTCCGATTGGGCTTTCTATCCGGCGGAGGTAGCAACCCACCCACTCCCAGCTTGCGATGTCGAACAATCGCCGAAGCAGCATCTCAATCTCAAACAGTTGCCGTAAATGACAGCCCCCGAGTTAACACCAAGACCACTCCTAGAGCATCAAAGTCCCCCAAAATCCTCTCTGCCTCGAATCCTACATCTCCGCGCTCTCCTCTTAAGTTGTCCCTCTTCAAGAACAGCTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAGCAGCGTGAAGACGGGACAGGGTACCGCCATATACACGGCGGAATGTGCTCACGCGTTTCATTTCCCGTGTATCGCTGCACATGTGAGAAAGCATGGTAGCCTGGTGTGTCCCGTCTGCAACGCCACCTGGAAAGACGTCCCTCTACTAGCGGCCCACAAGAACCTCGGCCCAGAATTTGCAACGCATCACGACGTCGCCCAGAGGCCCACCCAAAAGCCCAATGCCAGCGACCACAAAAAGCTAGACAACCCCTCCCCCGTTGTCAAAACCAAGCACGTGGAGCCACCTCAACAACCACCAAAGCATTCTGATTCAATCAGGTCCTACGACGACGACGAACCACTCCTTTCTCCCACTTCCGGCGGCCGGATCATCCCCATTCCCGAAGCCGACGAGAATGCCGAAGACGACGACGACGACGATGCCGGCGAGTTCCAGGGTTTCTTCGTCAATCCAAAACATTCCTCCTCGTCCAAGTCCTACTCCGATGCCTCGCAATCCAACGACGGGGATTCCAGAACAGTTCAGGTGAAATTGATGCCGGAGTGTGCCGTCATATCAGCTTCCCGAATGCACGATACGTATGCTTTGGTTCTGAAAGTGAAGGCTCCGCCGCCGCCGCCTCCTCCGCGGAGCAGCGCCGCGGCTCCACTTCTGGACCCGTCGCAGCGCGCGCCGATAGATCTTGTAACTGTGCTGGACGTAGGTGGCAGCATGAGCGGCGCTAAGCTTCACATGCTAAAGCGCGCGATGCGTTTGGTTATTTCGTCTCTTGGCCCCGCAGATAGGCTCTCCATTGTGGCTTTCTCGGCTTCACCCAAACGGCTCATGCCTTTGAGAAGAATGACGGCTCAGGGTCAGCGAATGGCTCGGCGCATCGTTGACCGGCTGGTGACAGGTCAAGGGTCCAGCGTGGGCGAGGCGTTGAGGAAAGCCACCAGAGTGCTGGAGGACCGGAGAGAGAGAAACCCTGTGGCAAGCGTCATGCTACTATCGGACGGTCAGGAAGAGCGGGTTCAGAGCAGTAACAAGGGAAATCAAAGGAATTCAGCGAGCCACGTGTCGTCCACGCGGTTTGCGCACATCGAGATTCCGGTCCACGCGTTTGGGTTTGGAACGAAAAGCGGTTACAGCCATGAACCGGGTGAGGACGCGTTTGCCAAGTGCGTGGGTGGGCTTTTGAGCGTGGTGGTGCAGGACTTGAGGATTCAATTGGGCTTTCAGTCCGATTCGGCGCCGATTGAGATTAGCGCTATCTACTCCTGCAGTGGAAGGCCCACGCTGCTTAGCTCAGGGGCCGTGCGGCTTGGCGACTTGTACGCTGAAGAAGACAGGGAGCTGTTAGTGGAATTGAGAGTTCCAGCGTCGGCTTTGGCGATAGGGACCCACCACGTGATGACGGTACGGTGTCTTTATAAGGATCCTGCAAGCCAGGAGATTGTATACGGTAGGGAGCAGGGTCTTGTGGTGCCCCCGCCACAGAGCGTGCGTTGTTCCGCTACCAGGATCCAGAGCCTCAGGAATCTCTTCATAACCACTCGAGCCATCGCCGAGTCCAGGAGATTGCTCGACCATAATGCTGACTTCACTAGTGCTCATCACTTGCTTGCTTCGGCGCGTGCCCTTCTCATGCAGTCCAGCTCTGCTTCTGCTGAGGACTACGTGCGCGGCTTGGAGGCTGAGCTGGCAGAGCTTCATTGGCGGAGACAGCATGAACAGGCGCATGTTCAGCAGCAGCAGCAAATCATGGTGATGCAGCAGCGGAGAAGAGGAAGCGAGAGGGAAGTGGCACTGGTGGACGAAAATGGCGAGCCGCTCACGCCTACGTCAGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGATGGCCATGATGAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2298 0.5627 MGTGWRRAFCTRDPESTISDKQPRTPSPTPSPRTCVRLGFLSGGGSNPPTPSLRCRTIAEAASQSQTVAVNDSPRVNTKTTPRASKSPKILSASNPTSPRSPLKLSLFKNSFKFRSSCGICLSSVKTGQGTAIYTAECAHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLGPEFATHHDVAQRPTQKPNASDHKKLDNPSPVVKTKHVEPPQQPPKHSDSIRSYDDDEPLLSPTSGGRIIPIPEADENAEDDDDDDAGEFQGFFVNPKHSSSSKSYSDASQSNDGDSRTVQVKLMPECAVISASRMHDTYALVLKVKAPPPPPPPRSSAAAPLLDPSQRAPIDLVTVLDVGGSMSGAKLHMLKRAMRLVISSLGPADRLSIVAFSASPKRLMPLRRMTAQGQRMARRIVDRLVTGQGSSVGEALRKATRVLEDRRERNPVASVMLLSDGQEERVQSSNKGNQRNSASHVSSTRFAHIEIPVHAFGFGTKSGYSHEPGEDAFAKCVGGLLSVVVQDLRIQLGFQSDSAPIEISAIYSCSGRPTLLSSGAVRLGDLYAEEDRELLVELRVPASALAIGTHHVMTVRCLYKDPASQEIVYGREQGLVVPPPQSVRCSATRIQSLRNLFITTRAIAESRRLLDHNADFTSAHHLLASARALLMQSSSASAEDYVRGLEAELAELHWRRQHEQAHVQQQQQIMVMQQRRRGSEREVALVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1048 765 Pfam RING-like zinc finger 118 147 IPR001841 -
Apr5g1048 765 MobiDBLite consensus disorder prediction 457 477 - -
Apr5g1048 765 MobiDBLite consensus disorder prediction 1 52 - -
Apr5g1048 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 172 IPR013083 -
Apr5g1048 765 SUPERFAMILY vWA-like 349 524 IPR036465 -
Apr5g1048 765 MobiDBLite consensus disorder prediction 273 296 - -
Apr5g1048 765 ProSiteProfiles Zinc finger RING-type profile. 118 163 IPR001841 -
Apr5g1048 765 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 765 - -
Apr5g1048 765 SMART ring_2 118 162 IPR001841 -
Apr5g1048 765 CDD vWA_C3HC4_type 350 521 - -
Apr5g1048 765 MobiDBLite consensus disorder prediction 196 210 - -
Apr5g1048 765 MobiDBLite consensus disorder prediction 66 99 - -
Apr5g1048 765 CDD RING-H2 118 163 - -
Apr5g1048 765 ProSiteProfiles VWFA domain profile. 351 495 IPR002035 -
Apr5g1048 765 SMART VWA_4 349 535 IPR002035 -
Apr5g1048 765 MobiDBLite consensus disorder prediction 187 296 - -
Apr5g1048 765 MobiDBLite consensus disorder prediction 454 477 - -
Apr5g1048 765 Pfam von Willebrand factor type A domain 352 458 IPR002035 -
Apr5g1048 765 Gene3D von Willebrand factor, type A domain 351 513 IPR036465 -
Apr5g1048 765 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 765 - -
Apr5g1048 765 SUPERFAMILY RING/U-box 112 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1048 Apr-Chr5 15111371 15114587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1048 - - gmx:100782780 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1048 5 15111371 15114587 Apr5g1048 5 15111371 15114587 ECH