Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1033 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGATCCTTGTGGTGGTCTGTGTGGTCCTCCCGGTGATCGGTTTTCTAATTCGCCGTAAATGGCGTCTTTCGGTGGCTAGGAAGGAGGAGATCAAGAGGCTTTTGATTTTGGCCGCCGAGGAAACTGCCAAGGCCGAAAGAGAAGCGTCCTATGTGTATGTCACGCCGGTTACCGCCGCTGCGAGCAATCAATGCGCCGTGTGCCATTTTCCCGCCACCGCGCGCTGCGCTCAGTGCAAATCCGTTCGCTACTGTTCTTTTGAGTGCCAAACTGTTCATTGGCGTCAAGGTCACAAATTAGAATGCCGTCCTCCTAGCACAACTCACCGGAGTGATGATGTAAGCAGTGAAGTAGTCGAGCAAGACTACTCTGGAATCCATGGCGAGAAGTCTAAAAGTGACAGTACAGAGTGTAAAACAACCTCCGAGAAAACCCCAATTTCTGATACCAGCTTTTCTCCAAAAGTTTCACTTGAAAAGGATGAAAATATTAGAGTTGAGTCCCTTGCGGAGGTAAATATAACAGATTCTAATTCTGAATTATCCAGTAACTCATTTTCTGGATTCTCAGCTTCCACAAATTCTAGCGATTCATCTGATGATTCCTCTGTCTGTGAGAGCATCATCTCAAATGAACATGACAGGCCAGAGGGACATATTTTTGTTGATCCCACCCTTGACATTCCTGATAACACTTCTGGTGATAATAACATGGGTGTAGCCATGTCTTCTTCACCAAAGTTTGCTATTTTGGTTGATTCAGTAGATGGTTTTTCTACGATGCACAAATTTAATCATGACAGACCTGGTTTTAGTAAAGAAGAGAGAAAACTTGCACCCAATGCTACTTCAGGTTCAAGTATGTGGAAGGGGAAAACAATTGAACCTTCTAGAGAGTTTTCTGGATTCTGGGACAAAACTCTTGATTCAAGGGGGATTGGTGAAGATGCTAAGTCTGACACTCATCCATCCCATTCTGATGAATCCATGGCCAAAAAGGCTGATTCTGGATCTTCATTTCACTTTTCATTCAGTAGTAACATGCTTCCTCTGCATGTACAAGATACTAAGGCCAAGGATTCTGTGTTGGATAATGCATTTCCAAACTGTGTTGGGGATAATATGCCATGTCCAGGATCAGCATCATCTGAGAATGACAGCATGAATTCTTCAAAGGTGAGGAATTTCTCCTTCATCAACAGCAGAGTCTCCAATGTTATGAACCATGGTACTCCAAGTGGATCTGAATCTGATCAACTGGAATCTAAGGACAGCTCTGGGCCACATTTATCTTCTTTCTCCCCTCATTCATCCAGTGTTGGCAAAGATTCAGGTTGTGCTGATGCTTTGAGCATCCATAACTTGCAATCAGTTGGCTCTGTGGTATCAAATCATATTGTGGACAAGTGTGGCAGCACCTTGAAATCTACTAAAATTAGATGCCTGACACGTGAACTTTCTGATTCTAATTTAGCTTCTGGAACTGAAGAGCATTCACATTCAAGTACAAAATGTGGGAATAATGGCATTGAATCTAGCACTCGAACTGCCACTTCCTCTCAGGTTTCCAGCTGTTCTGCCAATTCTAAGAGTGGCTTGAAAACATCTGTTTTAAAGGTTGTTGATCAGTTTAGGGGATCAAATTTGTCAAAGCACTTTCCATTAGCTGTTGGGAATGATATTACTGGAAGATACAATGACAAGGGTCTTTTCCCATATGAATTGTTTGTCAAGCTTTATAACTTGAACAAGGTGGAGTTTTGCCCTTTTGGTCTTATAAACTGTGGAAACAGCTGCTATGCTAATGCTGTGCTTCAGTGCTTAGCATTTACACCACCTCTTACTGCTTATTTGCTTCAAGGATTACATTCTAAATCATGTGTAAATAAAAAATGGTGTTTCACGTGTGAATTTGAAAGTTTGATTTTGAAGTCAAAAGGTACAAAATCTTCAGTGTCTCCTCTGGGCATAATCTCTCATCTACAGAATATTGGGAGTCAGCTTGGTAATGGCAGAGAAGAAGACGCACATGAATTTCTTAGGCATGTGATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGCTAATGCATCGGGCTCATCAGAAGAGGACACTACTCTAATGGGTCTAACATTTGGAGGTTACATTCGATCAAAGATAAAATGCATGAAATGTGGTGGAAAGTCTGAGCGTCAGGAAAGGATTATGGATCTGACTGTTGAGATAGAAGGGGAGATAACAACCCTGGTGGAGGCCCTTCGACGGTTTACAAGCACTGAGACTTTGGATGGAGAAAACAAGTACCATTGTGTCAGATGCAAATCTTATGAGAAGGCCAAGAAAAAGCTGACAGTTTCAGAGGCACCCAATGTTCTTACCGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCAATTCAATTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTGGATATCATGAATGCTGCCTTTTCAGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACGGCTGTTGAATTGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTATGCAAGGTGCTCGCCAAGGGCCCCAAGATTAATTAGGAACAGGATAATATCCCCAGATTCCAAAAGCAAAGTCAGTGGAAAGACTCTTACTACAAAAGCAAGATATATATCTACAAATTCTGGCACTGCTGAACATGTCAATAGTTTAATTTCTCCAGACGGATCACCTGCCTTAGAAACTTTCTATTCAAAGTTTCACCATCTGAAAAGGATTTTAGAAGAAGACTCATCTAGTGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACAGATAGTACCCGTGATTCAACCAGCACAGATGACTTCTCAGATTATATTTTTGGTGATTCAGGGAATGGCTGGAGTAGCATGTGGAGGAATTCCGATTCTGACTCATCCTCATCCTCTTCATCTTCTCCCTTGAACTCTCGACATTCACCCCTATCTGATATGGACCGGTATGATTCAGTTTCACCAGATGGATCTGGTTTGCGAATTCCCACAGTTTTAAGTCCAGTGATAGATGATCCTTTATACAGAAACAGACTGGCGGATGTTGAAAGGAGGGAGATAGTTGTTTCTCGTTTACATACTGACCCAACTTTACAAAATAGAAAGTTAGATAGTGATAGGATTAGTAGCAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGGGAGACTGACCCTTTTCTGAAACTAGGATCTAACCATTTTAATGATATAGGCTCTGGTGTATCACGTAGAAAGTCGAGGAAAAGAACGGATTGA 3471 0.4183 MRVTGDLGFSSLILVVVCVVLPVIGFLIRRKWRLSVARKEEIKRLLILAAEETAKAEREASYVYVTPVTAAASNQCAVCHFPATARCAQCKSVRYCSFECQTVHWRQGHKLECRPPSTTHRSDDVSSEVVEQDYSGIHGEKSKSDSTECKTTSEKTPISDTSFSPKVSLEKDENIRVESLAEVNITDSNSELSSNSFSGFSASTNSSDSSDDSSVCESIISNEHDRPEGHIFVDPTLDIPDNTSGDNNMGVAMSSSPKFAILVDSVDGFSTMHKFNHDRPGFSKEERKLAPNATSGSSMWKGKTIEPSREFSGFWDKTLDSRGIGEDAKSDTHPSHSDESMAKKADSGSSFHFSFSSNMLPLHVQDTKAKDSVLDNAFPNCVGDNMPCPGSASSENDSMNSSKVRNFSFINSRVSNVMNHGTPSGSESDQLESKDSSGPHLSSFSPHSSSVGKDSGCADALSIHNLQSVGSVVSNHIVDKCGSTLKSTKIRCLTRELSDSNLASGTEEHSHSSTKCGNNGIESSTRTATSSQVSSCSANSKSGLKTSVLKVVDQFRGSNLSKHFPLAVGNDITGRYNDKGLFPYELFVKLYNLNKVEFCPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCVNKKWCFTCEFESLILKSKGTKSSVSPLGIISHLQNIGSQLGNGREEDAHEFLRHVIDTMQSVCLMEAGANASGSSEEDTTLMGLTFGGYIRSKIKCMKCGGKSERQERIMDLTVEIEGEITTLVEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDKSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVELERVLTKGAYMLFYARCSPRAPRLIRNRIISPDSKSKVSGKTLTTKARYISTNSGTAEHVNSLISPDGSPALETFYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTSTDDFSDYIFGDSGNGWSSMWRNSDSDSSSSSSSSPLNSRHSPLSDMDRYDSVSPDGSGLRIPTVLSPVIDDPLYRNRLADVERREIVVSRLHTDPTLQNRKLDSDRISSNSSSSSSSSSRETDPFLKLGSNHFNDIGSGVSRRKSRKRTD* 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1033 1156 MobiDBLite consensus disorder prediction 112 150 - -
Apr5g1033 1156 Gene3D - 66 117 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 1108 1131 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 980 1012 - -
Apr5g1033 1156 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1127 - -
Apr5g1033 1156 Pfam MYND finger 76 113 IPR002893 -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 151 165 - -
Apr5g1033 1156 Gene3D Cysteine proteinases 595 915 - -
Apr5g1033 1156 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 415 450 - -
Apr5g1033 1156 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 112 169 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 1027 1047 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 1027 1069 - -
Apr5g1033 1156 Pfam Ubiquitin carboxyl-terminal hydrolase 601 903 IPR001394 GO:0004843|GO:0016579
Apr5g1033 1156 SUPERFAMILY Cysteine proteinases 597 908 IPR038765 -
Apr5g1033 1156 Coils Coil 39 59 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 979 1012 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 189 216 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 1105 1156 - -
Apr5g1033 1156 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 601 906 IPR028889 -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 501 523 - -
Apr5g1033 1156 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Apr5g1033 1156 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1127 - -
Apr5g1033 1156 MobiDBLite consensus disorder prediction 322 344 - -
Apr5g1033 1156 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 602 617 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1033 Apr-Chr5 14937596 14944384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1033 581 910 Miscellaneous Gene Families AT4G31670 50.453 4.14e-118 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1033 K11855 - gmx:100795674 1643.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1033 5 14937596 14944384 Apr5g1033 5 14937596 14944384 ECH