Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1026 ATGAAAACTTCAACGATTTACTATAGCAGGCACAGGCTGCATAACTGTGTCACTTCTTCTGAATCGTCTTCGTTGCCGTGGATTTCACCTCTTAAGTTTGCAAAAGCTGCAGAACCCAAACCGGATCCTCCTCCTGAAATCTGCGTTGCTCCCGGCGAAGCTCAGAGGAAGCGAAGGTATATCTCTCACGAGTCTGCGATTAACTTGATCAAACGAGAGAAAGATCCAGAACGCGCGTTGAAGATATTCAACATGGTGTCGGAGCAGAAGGGTTTTAATCACAACAATGCCACGTATTCTACCATTCTCGAGAAGCTTGCTCGGTTGAAGAAATTTCAGGCCGTGGATGGAGTTCTGCGTCAAATGAGCTATGAAACTTGCAAATTCCACGAGGGTATATTTATTAACCTTATGAAGCATTTTTCGAAATTCTCCCTTCATGAAAATGTGCTTCACGCGTTTTTCTCCATCCAGCCAATTGTTCGTGAAAAGCCCTCTCCCAAGGCTATTAGCACTTGTCTCAATCTTTTGCTTGATTCCAATCGGGTAGATTTGGCGCGAAAATTGCTACTGCATGCTAAGAGGAGTCTAACGAATAAGCCTAATGTGTGTATATTTAATATCTTAGTGAAGTACCATTGCAAAAATGGGGATTTTGATTCTGCTTTTGAAGTTGTGAAGGAAATGAGGAAATCTAATTTGTCTTACCCTAATTTAGTTACTTACTCAACCCTAATGGATGGTCTTTGTCAAAGTGGAAGACTAAAGGAAGCTTTTGAGCTTTTTGAGGAGATGGTTTCAAAGGATCACATTGTGCCTGATCCTCTTACTTACAATGTTTTGATCAATGGGTTTTGTCGCCGAGGTGAACCGGAGCGTGCTAGAAATGTTGTTGAGTTTATGAAGAATAATGGATGTCTTCCAAATGTGGTTAATTTCACAGCCCTTTTGAATGGCTTGTGCAAAGTGGGGAAACTGCAGGATGCAAGAGGCGTTTTGGCTGAGATGAAGAGTTCTGGTTTGAAACCTGATGCAGTTACTTATACTGCTTTGATCAATTTCTTTTGTAGGAATGGCCAGAGTAGTGAAGCTATAGAGTTGCTTAAAGAGATGAAGGAAAATGAGTGCCACGCCGATACTATTATATTCAATGTGATACTTGGGGGACTAGGCAGAGAAGGAAGGTTTGACGAGGCTCTGGATATGCTTCAGAACCTCCCACAGCAGGGTGCGTATTTGAACAAAGTTAGTTATAGAATTGTCCTGAATTCCTTAATCCAAAAGTGTGAGTTGCAAAAGGCAAAGACATTGTTGGCGCTAATGCTAAGTAGGGGGTTTCTACCCCATTATGCTACCTCGAATGAATTATTGGTTCATCTTTGTAAGGCAGGAATGGTTGATGCTGCTGCTGTGGCTCTAGTTGACTTGGTGGAGATGGGGTTCCGGCCAAGACTTGATTCTTGGGAGCTTTTAATTGAATTGATCTGCAGAGACAGAAAGCTATTGTATGTTTTTGAGCTGCTTGATGAATTACTGATCACAAATACTTGA 1551 0.4184 MKTSTIYYSRHRLHNCVTSSESSSLPWISPLKFAKAAEPKPDPPPEICVAPGEAQRKRRYISHESAINLIKREKDPERALKIFNMVSEQKGFNHNNATYSTILEKLARLKKFQAVDGVLRQMSYETCKFHEGIFINLMKHFSKFSLHENVLHAFFSIQPIVREKPSPKAISTCLNLLLDSNRVDLARKLLLHAKRSLTNKPNVCIFNILVKYHCKNGDFDSAFEVVKEMRKSNLSYPNLVTYSTLMDGLCQSGRLKEAFELFEEMVSKDHIVPDPLTYNVLINGFCRRGEPERARNVVEFMKNNGCLPNVVNFTALLNGLCKVGKLQDARGVLAEMKSSGLKPDAVTYTALINFFCRNGQSSEAIELLKEMKENECHADTIIFNVILGGLGREGRFDEALDMLQNLPQQGAYLNKVSYRIVLNSLIQKCELQKAKTLLALMLSRGFLPHYATSNELLVHLCKAGMVDAAAVALVDLVEMGFRPRLDSWELLIELICRDRKLLYVFELLDELLITNT* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1026 516 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 20 514 - -
Apr5g1026 516 Pfam PPR repeat 200 230 IPR002885 -
Apr5g1026 516 TIGRFAM PPR: pentatricopeptide repeat domain 382 410 IPR002885 -
Apr5g1026 516 TIGRFAM PPR: pentatricopeptide repeat domain 313 345 IPR002885 -
Apr5g1026 516 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Apr5g1026 516 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Apr5g1026 516 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Apr5g1026 516 TIGRFAM PPR: pentatricopeptide repeat domain 416 448 IPR002885 -
Apr5g1026 516 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Apr5g1026 516 SUPERFAMILY HCP-like 212 438 - -
Apr5g1026 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Apr5g1026 516 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 20 514 - -
Apr5g1026 516 Pfam PPR repeat family 237 287 IPR002885 -
Apr5g1026 516 Pfam PPR repeat family 308 357 IPR002885 -
Apr5g1026 516 Gene3D Tetratricopeptide repeat domain 288 393 IPR011990 GO:0005515
Apr5g1026 516 Gene3D Tetratricopeptide repeat domain 52 158 IPR011990 GO:0005515
Apr5g1026 516 Gene3D Tetratricopeptide repeat domain 159 287 IPR011990 GO:0005515
Apr5g1026 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Apr5g1026 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Apr5g1026 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Apr5g1026 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Apr5g1026 516 Gene3D Tetratricopeptide repeat domain 394 515 IPR011990 GO:0005515
Apr5g1026 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Apr5g1026 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Apr5g1026 516 Pfam PPR repeat 416 446 IPR002885 -
Apr5g1026 516 Pfam PPR repeat 382 406 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1026 Apr-Chr5 14862494 14864717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1026 202 512 Glycosyltransferase AT1G05670 28.296 3.44e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1026 - - mtr:MTR_3g100600 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1026 5 14862494 14864717 Apr5g1026 5 14862494 14864717 ECH