Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1021 ATGGACTCTGTTCCTTTTCGCGATGGCAACATACGCACCATTCTCGACACTCGATGCCTTCACGCTCCTCGAGATGCTCTTCCTCGTTTGCAGACTCATTCCTCGTTGATTCGGAGGCTTTGTCAAGAAAGGGAGTTAGAGGGGCACCTTGGCTGTGTTAATGCGGTGGCTTGGAATTCCCAAGGTTCATTATTGATATCTGGATCAGATGATACACGGATCAATATTTGGAGCTATTCTGGACGAAAACTCTTGCATTCTGTTGACACTGGACATAGTGCAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGATCTTGTAGTCTCTGGGGCTGGAGATGCTGAAGTCCGAGTATTTAATTTGTCTCGCTTAAGTGGGAGTGGATTTAGTGAGAATGCAATTGCTCCATCTGCACTTTACCGTTGTCACACTCGAAGAATCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTTGTATGGAGTGCTAGTGAAGATGGAACGCTAAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCCCCAGCAGGATCTTCACACCAAGAGTGTCGAAATATTCTACTTGACTTAAGATGTGGAGCAAAAAGGTCACTTGGCGATTCTCCTAAACAAGTCCTTGCTTTAAAATCTTGTGACATTAGTTCAACTAGACCACACTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGTTTATATGATAGAAGGATGCTACCGCCTCTGAGCTCCTGTCGGAGAAGAATGTCTCCACCTCCTTGTGTTAATTACTTTTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGCTTGCACTTAACTCATGTTACATTCAGTCCTGATGGACACGAGGTTCTCCTCAGCTATAGTGGAGAGCATGTATACTTGATGAATGTAAATCATGCTGGAGTGAATGAGATGCAATATACTTCTGAAGATGCATCAAAGCTGATGGCTTACTCTCCAACAATTAATGGGGTAGAGTTGCAACCTTGTGTGTCTAATGTCTTCCCAAATGGTTTTCCTATTAAAAAGAACATCGCTGCTAAGCTTGACAAATGCATGAAACTAATAAAGCATGCTAAGAAATCAATGGACAATGGGACAGCCTATTATGGAATTGAGGCATGTAATGAGGTTTTGAGTGGCTACAGTCATATTGTTGGGCCTGTATTAAAACATGAATGCTTGTGTACCCGTGCTGCACTATTGCTTAAGAGGAAGTGGAAAAATGATGCTTATATGGCTATAAGAGACTGCTATGCTGCTAGGAAAATTGATAATTCATCCTATAAAGCTCTTTACTATATGTCAGAAGCATTGTCACAGCTGGGCAGACACGAAGAAGCTTTGGAATTTGCTATTGCATCCCATTCATTGGCCCCATCCAAATCTGAAGTTGCAGAAAGAGTGGAGAATGTGAAGAATGATATTGCTTTAGCTGAAGCTGAAAAAAATAGCAAGACAAATGATGGAGCATCAAGGTTTGACAATCGGGGTGGAAGAATATTATCATTAAGTGATATACTCTATCGTTCGGAGGCTAATAGTGATGGCTCACAAGATGGTCCAAGATCAGAGAGGGATGATTCTGATTATGATGAGGAATTGGAATTGGACTTTGAAACATCAATCTCTGGTGATGAGGGACATGATCTTGAATCAAATATTCTTCATGGAAGTTTAAATCTTAGAATTCATCGTAGAGGTGACTCTAGAGAAAATGCTGGTGTAAATGGCTCATGCGAGTCACCTTCATCATCTTCTCAAAATAGTAGAATGTCTTACCAGCCTGAAGCAGCTGTTGACATGAAACAGAGATTTATTGGCCACTGCAATGTTGGCACTGATATAAAACAGGCTAATTTTCTTGGCCAAAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGCAGATGGTTTATATGGGAAAAACGAACTGGTAGACTCGTAAAAATGCTGAATGGTGATGAATCAGTTGTGAATTGTGTACAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAACTGCTCCTGTTCCATCTTCTGTTGCCGGTGGTTCAGCAGGACCAGAAACTGGTGATGTGTTGGTTGCAATGGAGAGCAATCAACAAAAATTATCCCGTAACCGTGATTCTATTCTGCCCTTTGAGCTTTTGGAACCATTTAGAATGCATGAGTTTCCTGAAGGGTCGCTACGCTTGCGCCCATTTGAATGCGCTCAAAGCTAA 2292 0.4171 MDSVPFRDGNIRTILDTRCLHAPRDALPRLQTHSSLIRRLCQERELEGHLGCVNAVAWNSQGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFIPETSDDLVVSGAGDAEVRVFNLSRLSGSGFSENAIAPSALYRCHTRRIKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRCGAKRSLGDSPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRRRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVNEMQYTSEDASKLMAYSPTINGVELQPCVSNVFPNGFPIKKNIAAKLDKCMKLIKHAKKSMDNGTAYYGIEACNEVLSGYSHIVGPVLKHECLCTRAALLLKRKWKNDAYMAIRDCYAARKIDNSSYKALYYMSEALSQLGRHEEALEFAIASHSLAPSKSEVAERVENVKNDIALAEAEKNSKTNDGASRFDNRGGRILSLSDILYRSEANSDGSQDGPRSERDDSDYDEELELDFETSISGDEGHDLESNILHGSLNLRIHRRGDSRENAGVNGSCESPSSSSQNSRMSYQPEAAVDMKQRFIGHCNVGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLVKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPTAPVPSSVAGGSAGPETGDVLVAMESNQQKLSRNRDSILPFELLEPFRMHEFPEGSLRLRPFECAQS* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1021 763 MobiDBLite consensus disorder prediction 586 604 - -
Apr5g1021 763 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Apr5g1021 763 SUPERFAMILY WD40 repeat-like 39 694 IPR036322 GO:0005515
Apr5g1021 763 Pfam WD domain, G-beta repeat 659 694 IPR001680 GO:0005515
Apr5g1021 763 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Apr5g1021 763 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 27 762 - -
Apr5g1021 763 Gene3D Tetratricopeptide repeat domain 359 487 IPR011990 GO:0005515
Apr5g1021 763 MobiDBLite consensus disorder prediction 579 604 - -
Apr5g1021 763 Gene3D - 611 747 IPR015943 GO:0005515
Apr5g1021 763 SMART WD40_4 265 307 IPR001680 GO:0005515
Apr5g1021 763 SMART WD40_4 39 78 IPR001680 GO:0005515
Apr5g1021 763 SMART WD40_4 610 653 IPR001680 GO:0005515
Apr5g1021 763 SMART WD40_4 136 176 IPR001680 GO:0005515
Apr5g1021 763 SMART WD40_4 209 244 IPR001680 GO:0005515
Apr5g1021 763 SMART WD40_4 656 695 IPR001680 GO:0005515
Apr5g1021 763 SMART WD40_4 81 123 IPR001680 GO:0005515
Apr5g1021 763 Coils Coil 473 500 - -
Apr5g1021 763 Gene3D - 132 336 IPR015943 GO:0005515
Apr5g1021 763 Gene3D - 29 131 IPR015943 GO:0005515
Apr5g1021 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Apr5g1021 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 694 IPR001680 GO:0005515
Apr5g1021 763 MobiDBLite consensus disorder prediction 522 542 - -
Apr5g1021 763 SUPERFAMILY TPR-like 403 476 IPR011990 GO:0005515
Apr5g1021 763 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 27 762 IPR045151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1021 Apr-Chr5 14808355 14820572 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1021 K11807 - gmx:100793917 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1021 5 14808355 14820572 Apr5g1021 5 14808355 14820572 ECH