Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1016 ATGCTTTCATTGGTGGGAAAAGGAACACGAATAAGAAGCATGACATTGAAATGTCTATCCCTTACCCATTCACTCACTCAAACCCATAATTCACAACACGTCACTACCTTCTCCTCTTCTCTCCACAACCATAACCCTCTCTTTCAGATATACTCCGGAATTCTCAGCTCTCGAATTCGAGCGTTTTCGACCAACTTCAGAGGCGGAACCACACCCACTGCTTCTTCTTCTTTGCCCCAAATCATGGCGAGTTTCGACACTGAATCTGTCACTTACCTTACGCAGCGTGAAGCCGCTGAGATCGATGAGTCGCTCATGGGTCCTCTTGGCTTCAGTGTCGACCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTGCTTCTATATCTGAGGTTTACAAACCAAGTGAGTATAGTCGTGTTCTTACCATATGTGGCCCTGGTAATAATGGTGGTGATGGTCTGGTGGCTGCCCGTCACCTGCATCACTTTGGTTATAAGCCCTCAGTCTGCTACCCAAAGCGTACTGCAAAACCTCTTTATACTGGATTAGTTACTCAGCTTGAAGCACTGTCAATTCCATTCTTGTCAGTGGAAGACCTGCCATCAGATCTCTCAGAAGACTTTGACATTCTATTAGATGCAATGTTTGGATTCTCATTTCATGGTTCTCCAAGGCCTCCTTTTGATGATTTGATCCAGAAACTAGTCTCTTTGCATAATCATAATCAAATTGGTCAAAAACAATCAGTTATAGTGTCTGTAGATATTCCCTCTGGGTGGCATGTTGAAGACGGAGATGTTGATGGTACTGGCATTAAACCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTATGTGCAAAGAAATATGGTGGTCATCACCACTTTCTTGGAGGTAGATTTGTTCCTCCTGCCATTGCAGAAAAATATAAGCTTATACTTCCACCATATCCTGGAACATCCATGTGTGTTCGAATTGGAAAGCCTCCACAAATTGATATTTCAGCTTTAAGAGAGAACTATATCTCTCCAGAATTTCTGGAAGAGCAGGTGGAGGCTGACCCTATTAATCAGTTTCGTAAATGGTTTGATGATGCAATGGCTGCTGGTTTGAAGGAACCAAATGCTATGGCCTTGTCAACTGTAGGGAAGGATGGACAACCCTCATCACGAATGGTATTGCTAAAAGGCTTGGAAAAGGATGGATTTGTTTGGTACACAAACTATGAAAGTCAAAAGGCATCTCAATTATCTGAAAATCCACATGCATCACTTCTTTTTTATTGGGATGGTTTAAACCGGCAGGTACGAGTGGAGGGGTCTGTTCAAAAAGTCTCTGATGAGGAATCAGAAAAGTATTTCCATAGCCGTCCTAGAGGAAGCCAGATTGGAGCAATAGTCAGCAAGCAGAGCACTGTAGTGCCTGGTAGGCATGTTCTTTATCAAGAGTACAGAGAGCTGGAACAAAAATATGCGGATGGAAGTTTGATCCCTAAACCTAAGAACTGGGGAGGATACAGGCTAAGACCACAACTTTTTGAGTTTTGGCAAGGACAGCAATCTCGCTTGCATGACAGGTTGCGATATACTCCCCATGAGATCAATGGACAACGGCTGTGGAAGGTTGAGCGATTGGCCCCTTGA 1644 0.438 MLSLVGKGTRIRSMTLKCLSLTHSLTQTHNSQHVTTFSSSLHNHNPLFQIYSGILSSRIRAFSTNFRGGTTPTASSSLPQIMASFDTESVTYLTQREAAEIDESLMGPLGFSVDQLMELAGLSVAASISEVYKPSEYSRVLTICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTAKPLYTGLVTQLEALSIPFLSVEDLPSDLSEDFDILLDAMFGFSFHGSPRPPFDDLIQKLVSLHNHNQIGQKQSVIVSVDIPSGWHVEDGDVDGTGIKPDMLVSLTAPKLCAKKYGGHHHFLGGRFVPPAIAEKYKLILPPYPGTSMCVRIGKPPQIDISALRENYISPEFLEEQVEADPINQFRKWFDDAMAAGLKEPNAMALSTVGKDGQPSSRMVLLKGLEKDGFVWYTNYESQKASQLSENPHASLLFYWDGLNRQVRVEGSVQKVSDEESEKYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYRELEQKYADGSLIPKPKNWGGYRLRPQLFEFWQGQQSRLHDRLRYTPHEINGQRLWKVERLAP* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1016 547 Gene3D - 89 331 IPR036652 -
Apr5g1016 547 ProSiteProfiles YjeF N-terminal domain profile. 98 314 IPR004443 -
Apr5g1016 547 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 95 291 IPR004443 -
Apr5g1016 547 SUPERFAMILY YjeF N-terminal domain-like 91 321 IPR036652 -
Apr5g1016 547 Hamap NAD(P)H-hydrate epimerase [nnrE]. 94 329 IPR004443 -
Apr5g1016 547 PANTHER NAD(P)H-HYDRATE EPIMERASE 86 532 IPR032976 -
Apr5g1016 547 Pfam YjeF-related protein N-terminus 114 286 IPR004443 -
Apr5g1016 547 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 503 547 IPR019576 -
Apr5g1016 547 Gene3D - 341 539 IPR012349 -
Apr5g1016 547 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 330 547 IPR000659 GO:0004733|GO:0008615|GO:0010181
Apr5g1016 547 PANTHER NAD(P)H-HYDRATE EPIMERASE 86 532 - -
Apr5g1016 547 SUPERFAMILY FMN-binding split barrel 348 547 - -
Apr5g1016 547 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 513 526 IPR019740 GO:0016638
Apr5g1016 547 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 340 547 IPR000659 GO:0004733|GO:0008615|GO:0010181
Apr5g1016 547 Pfam Pyridoxamine 5'-phosphate oxidase 363 449 IPR011576 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1016 K23998 - gmx:100795497 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1016 5 14754720 14763540 Apr5g1016 5 14754720 14763540 ECH