Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1002 ATGCCCACTAACGAAGACTTCCAAGGTGTTTCGAATTGTTATGTGTTCAAGAGCAGATTGCAGGAGTATGCTCAGAAGGCGGGGCTCCCCACGCCGGTCTATGAAACTATTAAGGAAGGACCTTCTCATGAACCTTCTTTTAGGTCAACAGTGATAGTGAATGATGTTCGATATGATTCTTTGCCTGGATTTTTCAACCGTAAGGCAGCAGAGCAGTCAGCTGCAGAAGTTGCTTTGGTGGAGTTGGCCAAATCTAATGAAGTTAATCAATCCATCACTCAACCTGTCCATGAAACTGGATTATGCAAGAATTTACTTCAGGAATACGCACAAAAGATGAATTATGCAATGCCTATGTATCAGTGCAAAAAGGAAGAAACACCAGGTCGAGCATCAGTATTTTCATGTACCGTTGACATTGGGGGGATTCTCTATATTGGGGGAACCGCAAAAACAAAGAAGGAAGCAGAGATAAAAGCAGCTAGAACTGCTTTATTAGCTATCCAGTCAAGTGCATCTCTTGCTTCCCAAAACCAGGTTGGCCATTCACAGTTGACAGTCATTCCATGCAGAAAAAGGGCAACAGAATCTGTTGTAATAGCTGATGAGGCTTCAAATCCCCCAAAGCCTAAGAAAGCACGGTTTAAAAGGAAATCTTCTAAGAGGAAAACCCCTAGAGATAAGATGGGCCAAAGTCATGCTGAAAACGTGGGCATCAGAGCAAATACCAATCATGAGGAAGAAGCACTTGCAAGTGTTAATAATGAATCTGGCGTTCATGAAATGAAATCTGAAGAATTAACTGTAGAAGCCACGAAGAATTTTGAGAATGGAATGTTAGTTAATTATCATGAGAATAAAGCATTGGCTGGGGAGGGTTCTTTTGCTCTGAATAGCCAAGAGATTTTTGAAAATGGGAAGTCAACAGAATTATACTGCAAGGAAAACAATCTTGGGACTGTTGTTACAGAACTATCTTCTGTGGCTAATGGAGGCATACCGGAAATAAGTGTGGAGATGAACACGCAGCAATACAATGGAGAAATGGTCAGCGCCGCGGATCATTGTATTGTGGGGGGTTTTGAGGCTTAA 1092 0.4194 MPTNEDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVELAKSNEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKEETPGRASVFSCTVDIGGILYIGGTAKTKKEAEIKAARTALLAIQSSASLASQNQVGHSQLTVIPCRKRATESVVIADEASNPPKPKKARFKRKSSKRKTPRDKMGQSHAENVGIRANTNHEEEALASVNNESGVHEMKSEELTVEATKNFENGMLVNYHENKALAGEGSFALNSQEIFENGKSTELYCKENNLGTVVTELSSVANGGIPEISVEMNTQQYNGEMVSAADHCIVGGFEA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1002 363 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 1 313 IPR031147 GO:0003725
Apr5g1002 363 Gene3D - 98 170 - -
Apr5g1002 363 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Apr5g1002 363 Pfam Double-stranded RNA binding motif 17 79 IPR014720 -
Apr5g1002 363 SUPERFAMILY dsRNA-binding domain-like 103 170 - -
Apr5g1002 363 Gene3D - 16 97 - -
Apr5g1002 363 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Apr5g1002 363 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Apr5g1002 363 SUPERFAMILY dsRNA-binding domain-like 15 85 - -
Apr5g1002 363 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725
Apr5g1002 363 SMART DRBM_3 16 83 IPR014720 -
Apr5g1002 363 SMART DRBM_3 102 169 IPR014720 -
Apr5g1002 363 MobiDBLite consensus disorder prediction 199 244 - -
Apr5g1002 363 PANTHER RIBONUCLEASE III 1 313 IPR011907 GO:0003723|GO:0004525|GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1002 Apr-Chr5 14638086 14641632 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1002 - - gmx:100782651 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1002 5 14638086 14641632 Apr5g1002 5 14638086 14641632 ECH