Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1001 ATGCACGGTAGGCCTCGCAAAGCGTTGAAGGAAGAAGATGCAGCTGCTGCTTCAGCCAAAGCTGAAAAGCTTCGTTCAGTCCAATTGCAGTTCCTCGCCAATCACCACAATCGCATATATAGCAAGGAAGCACTAGATGTGAGCGCGAAGCTTCTAGAAGTTAATCCAGAGTGCTACACTGCTTGGAATTACAGAAAGCTCGCCGTTCAACACCTCCTCTCTGACTCCGATTCCGATCCTTACTCTCTCTTCGACAACGAGCTCAAACTCGCGGAGATTGCGTTGAGGAAGAATTTCAAGTCTTATGGTGCGTGGCATCATAGAAAATGGGTACTAAGCAAGGGGCATTCATCCATAGACAACGAATTGCGTCTTCTCAATGGTTTTCAGAAGGCAGATCCTCGAAATTTTCACGCATGGAATTATCGAAGGTTTGTTGCTTCACTGATGAAACGATCAGATGAGGATGAGTTGAAATACACGGAGGATGTGATAGGGGCTAATTTCAGTAATTACTCTGCGTGGCACAATCGTAGTTGGCTTTTGTCTAATTTACTGAAAAGTAAGGCTGAAGGATATTTCCCTAAAGAAAAAGTTTTGAAAGAGGAGTTTGAGCATGTCCACAATGCTATTTTCACCGATCCAGATGATCAGAGTGGATGGTTTTATCATCTTTGGCTTATTGATCAAACTGTGAAAACTGATGCTCCTCTACTTGTTTCATCTTGGCCTTCCCATGGATCTAATATAACCCTAAATGGGAACAACTTCCCAATCCTTCTTTATTTCAATCAAGCTGTTGAAGGCATAAACACATTCACAGTGGCTATTAAATCTGAAATTTTAAAGGAGGAACTTGTTTGGAAACCACTTTCAACAAACAATTCAAATACTGCTCAAGTTTGGGTTGCATATCTAAACCTTGGAACTATGGAGCTTCAACTGTCAAAAACTTATTCTGTAGAGATCAACATTGGACATTCTAAGGGTATTGTATCTCCAAGCGGAAATCACTACGGTGATCCTTCCCAAATTTCCTTTAAAGTGTTTGTACAGCTTCCATATACTGAACCTACTGAAGGACAGGGTGGAAAAAGGACTATGTGGAATGATATAAATTTCCAAAAAGTTGATCATTTTCAGGAATCAAATTCAATTGTTTCTTCTGATCAAAATCACCTTAATCCAACAATATCCAATTGGTGCATGGAGGAAATTAATGAAGAGATAACTAAATTTCGGGACTTATTGTCAGAGTATGACTGTAAAATTGGAAGGCTTACTCTTGCAAGACTTTTGAGTGCTCTTGATTTGTTATCATCTCAACACGATAGAAGAAAATCTCACATCGAAGAAGTTCTTCAACTTTACACTGATTTGATGAAGTTGGATCCAACACATTCTCTATACTATAAGGATGAGCGTAGTCGGACGTTACTTCAGCAGATAACTTCAACCAGGGAGTCTTTACTACCATACTGCCACTATTATAAAGATGCAACAGAAGCAATCACTGGTTATGTCTGTCTACGATTACAGAATCTATCATTGTCACGGATGGGGTCTGTTGAGAATTTATTGTGGGTGCAAATGCTAGACCTTAGTCACAATGAACTTCAATCCATTGACGGGTTGGAGGCCATGCAGCTTCTATCTTGCTTAAATCTGAGTCATAATAAACTTGCTAGTTTTACTGCTTTGGGGCCTCTCAGATTGCTCAAGTCACTTAAAGTGTTGAATATCTCATACAATGAATTAGGCTCTCACTCAATTGACACAACAAGATATTTATGCTCTTCTCCTTTAGCTCATACTGAAGAATTTGCATGGGACCGTTTTGAAATCCTCATGGGCAGCATTGGTGCTGCAAAATTTTGGGAAGCTTTCTTGATACTTGGAAGCTTGAAATTGACTGAGTTAAACATAACAGGGAATGCAGTAGCTGATGAGAACTTCAGGTCATTTTTTGTCAAAGTTTTGCCAACACTCAAGTGGCTAGATGATGAAGAATTATCTTGA 2019 0.3967 MHGRPRKALKEEDAAAASAKAEKLRSVQLQFLANHHNRIYSKEALDVSAKLLEVNPECYTAWNYRKLAVQHLLSDSDSDPYSLFDNELKLAEIALRKNFKSYGAWHHRKWVLSKGHSSIDNELRLLNGFQKADPRNFHAWNYRRFVASLMKRSDEDELKYTEDVIGANFSNYSAWHNRSWLLSNLLKSKAEGYFPKEKVLKEEFEHVHNAIFTDPDDQSGWFYHLWLIDQTVKTDAPLLVSSWPSHGSNITLNGNNFPILLYFNQAVEGINTFTVAIKSEILKEELVWKPLSTNNSNTAQVWVAYLNLGTMELQLSKTYSVEINIGHSKGIVSPSGNHYGDPSQISFKVFVQLPYTEPTEGQGGKRTMWNDINFQKVDHFQESNSIVSSDQNHLNPTISNWCMEEINEEITKFRDLLSEYDCKIGRLTLARLLSALDLLSSQHDRRKSHIEEVLQLYTDLMKLDPTHSLYYKDERSRTLLQQITSTRESLLPYCHYYKDATEAITGYVCLRLQNLSLSRMGSVENLLWVQMLDLSHNELQSIDGLEAMQLLSCLNLSHNKLASFTALGPLRLLKSLKVLNISYNELGSHSIDTTRYLCSSPLAHTEEFAWDRFEILMGSIGAAKFWEAFLILGSLKLTELNITGNAVADENFRSFFVKVLPTLKWLDDEELS* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1001 672 Gene3D Protein prenylyltransferase 1 243 - -
Apr5g1001 672 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515
Apr5g1001 672 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 581 - -
Apr5g1001 672 Coils Coil 403 423 - -
Apr5g1001 672 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 118 152 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 83 117 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 153 187 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 SUPERFAMILY L domain-like 505 591 - -
Apr5g1001 672 SUPERFAMILY Protein prenylyltransferase 11 474 - -
Apr5g1001 672 Gene3D Ribonuclease Inhibitor 499 672 IPR032675 -
Apr5g1001 672 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 199 233 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 PANTHER - 1 581 - -
Apr5g1001 672 Pfam Protein prenyltransferase alpha subunit repeat 42 72 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 Pfam Protein prenyltransferase alpha subunit repeat 200 230 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 Pfam Protein prenyltransferase alpha subunit repeat 155 185 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 Pfam Protein prenyltransferase alpha subunit repeat 120 147 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 Pfam Protein prenyltransferase alpha subunit repeat 85 113 IPR002088 GO:0008318|GO:0018342
Apr5g1001 672 PRINTS Leucine-rich repeat signature 529 542 - -
Apr5g1001 672 PRINTS Leucine-rich repeat signature 573 586 - -
Apr5g1001 672 ProSiteProfiles Leucine-rich repeat profile. 550 571 IPR001611 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1001 K14050 - gmx:100807900 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1001 5 14631604 14636919 Apr5g1001 5 14631604 14636919 ECH