Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0987 ATGGCGAACCGCTCCCTCTCCGCCGGACTCAAACGCATCAGTTGTGTGTTCGGTGCACGAAGTCTATGTAGCACCGCAGCTACTCGCGCTTATGCGTTCAATGCGACGGAGGAGCCTTTCGCGCAAAACAACCCGAAGAACCGAATTCCAGGACTCAGATCACCAAAGAAGAGTCCAGTACTAGCGCTTCAAAATTGGGTGGACCAAGGAAACAGGATTTCACCCTCCGAGCTCAGACGCATCGCCAGAGACCTTGTTAAATCGAAGCGCTACCACCACGCCCTCGAGGTCTTTAAATGGATGGAAAACCAGAAGAAGTTCTATGTGATCCCATCTGATCATGCTATGAAATTGGAATTGATCATTAAAAATTATGGTCTAATGGAAGCTGAAGACTATTTTATGAATATACCTGACTCAGCTGCAAAGAAAGTTGCCTGTCTCACCCTTCTACGTGGCTATATAAGAGAGAGGGACACTAGTAAAGCTGAGACTTTCATGGTGAAGCTCTATGAACTGGGGCTGGTGGTGAGCCCTCACCCTTATAATGAGATGATGAAACTATATCTAGCCACCTGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCATAATAAAGTACCCTGCAATGTTCTATCCTACAACCTTTGGATGAATGCTTGTGGTGAGGAAGTAGGATATGGGGTTGCAGCAGTAGAGGCAGTTTTTAGAATAATGCAAAACGACAAGACTGTTGAAGTTGGATGGAGCAGTCTTGCTACATTAGCCAATGTTTATAAGAAAGTGGGACAATCTAAGAAAGCTGTTCAGGTTCTCAAAATTGCTGAAAATAAACTATCTACCAGTAACCATCTTGGTTATTTCTTCCTAATAACACTATATACTTCTTTGAAGCAAAAGGAAGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGGTAGAAGAATGAGTTGTGCCAACTACATTTGCATATTAACATGCTTGGTGAAACTTGGGGACATTGTACAAGCCAAGAGAATCTTCTTAGAATGGGAGTCCAATTGTCGGAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGCGGAATGGATTAATGGACAAAGCTGAATCATTACATCTCCACACATTGCAGAAGGGTGGTTGTCCAAACTACAAAACGTGGGAAATTCTCATAGAAGGATACATCAATAGGCAAAAAATGGATGAGGCTATTATTGCCATGAGAAGAGCTTTGACTATGATGAAAGATTGTCATTGGAGGCCACCACATGGACTTGTTTTAGCCATTGCAGAGTATTTGGAAAAAGATGGGAACTTTGAATATGCTAATAAGTATATTACAGACATCCATAATTTTGGTCTTTTTAGTTTATCGTTGTATAAAATATTGCTTAGAATGCACCTCTCTGCAAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAAGTTGTGATGGATAATGAGACACTTTCCATTCTCAAAGCCTTCACTAGGTAG 1530 0.4163 MANRSLSAGLKRISCVFGARSLCSTAATRAYAFNATEEPFAQNNPKNRIPGLRSPKKSPVLALQNWVDQGNRISPSELRRIARDLVKSKRYHHALEVFKWMENQKKFYVIPSDHAMKLELIIKNYGLMEAEDYFMNIPDSAAKKVACLTLLRGYIRERDTSKAETFMVKLYELGLVVSPHPYNEMMKLYLATCEYRKVPLVIQQMKHNKVPCNVLSYNLWMNACGEEVGYGVAAVEAVFRIMQNDKTVEVGWSSLATLANVYKKVGQSKKAVQVLKIAENKLSTSNHLGYFFLITLYTSLKQKEGVLRLWEASKAVGRRMSCANYICILTCLVKLGDIVQAKRIFLEWESNCRKYDIRVSNVLLGAYVRNGLMDKAESLHLHTLQKGGCPNYKTWEILIEGYINRQKMDEAIIAMRRALTMMKDCHWRPPHGLVLAIAEYLEKDGNFEYANKYITDIHNFGLFSLSLYKILLRMHLSANKPPFHILKMMDEDKVVMDNETLSILKAFTR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0987 509 Gene3D Tetratricopeptide repeat domain 52 230 IPR011990 GO:0005515
Apr5g0987 509 Pfam Pentatricopeptide repeat domain 180 226 IPR002885 -
Apr5g0987 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Apr5g0987 509 PANTHER OS12G0527900 PROTEIN 24 508 - -
Apr5g0987 509 Pfam PPR repeat 361 380 IPR002885 -
Apr5g0987 509 PANTHER OS02G0796400 PROTEIN 24 508 - -
Apr5g0987 509 SUPERFAMILY HCP-like 257 454 - -
Apr5g0987 509 Gene3D Tetratricopeptide repeat domain 255 444 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0987 Apr-Chr5 14445135 14451226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0987 22 429 EF-hand Containing Proteins AT1G02150 31.873 2.30e-77 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0987 - - gmx:100813805 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0987 5 14445135 14451226 Apr5g0987 5 14445135 14451226 ECH