Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0984 ATGGGGAGCCTAGAGAGAGACCATGAACATGCCAATAATCTCACCCAATCCCTCTTACCTAAAGACCTTCCGATTCAATCTCAAGATGAACAACCCTTTCGCAACAAGCTCTGGGTTGAAACCAAAAAGCTATGGCTCATTGTCGGCCCCTCTATCTTCAGCCGCATCGCTGCATTCACCATGAACGTCGTAACCCAAGCCTTCGCCGGTCACCTCGGTGAAGTTCAACTCGCTTCCATCTCTATTGCTAACACCGTCATCGTTGGCTTCAATTTCGGCCTTCTATTGGGGATGGCGAGCGCGTTGGAGACACTGTGCGGGCAAGCGTTTGGGGCGAAGAGATACCACATGATGGGTATATACATGCAGAGGTCATGGATTGTTCTGTTCATGTGCTGTTTCTTGTTGTTGCCGTTTTACGTCTTCGCCACCCCGCTTCTGAAATTCCTTGGCCAACCAGATGACGTGGCAGAGTGGAGTGGGGTTGTGGCAGTTTGGCTCATTCCTCTGCACTTCAGTTTCGCTTTTCAATTCCCTCTGCAGAGGTTTCTTCAGTGCCAGCTCAAAACCGCTGTTATTGCTTGGGTTTCGTTGCTGGGCTTGGTGGTTAATGTTGTCACCAGCTGGCTCTTGATGTATGTGTGGGATTTTGGACTTTATGGTGCGGCTATTGCTTTGGACCTTTCGTGGTGGGTTTTGGTGTTTGGTATGTATGCTTACACTGCCTATGGTGGATGCCCTTTAACTTGGACTGGTTTTTCCATGGAAGCATTTTCTGGACTCTGGGAGTTCCTCAAACTCTCTGCTGCTTCTGGGGTCATGTTATGGATATTGGTACTCATGACAGGCCAGTTGGAGAATGCCACTATTGCTGTCGATGCATTGTCAGTGTGTATGACAATAAACGGATGGGAGATGATGATTCCTCTGGCATTCTTCGCCGGTGTTGGGGTAAGGGTGGCAAATGAGCTAGGAGCAGGCAACGGGAAAGCAGCAAAATTTGCAACTCAAGTATCAGTGGTACAATCAACAGTGATCGGGCTCATCTTCTGCGCTCTCATAATGATATTCCATGACCAGTTTGCATACATATTCACCACCAGTACTTCTGTACTTGAAGCTGTTGACGATATGGCATTACTGCTAGCGGTCACCATTCTTCTCAACAGTGTTCAACCCATTTTGTCAGGAGTGGCTGTTGGTTCGGGATGGCAAGCATTCGTAGCATATATTAACATAGGATGCTACTACGTTATCGGGCTCCCACTCGGAATTCTCATGGGATGGGTCTTCAAAAGTGGTGTCACTGGCATCTGGGGGGGCATGATCTTTGGTGGAACCGCCATCCAAACGCTGATACTGATCATAGTAACTGCGCGATGTAACTGGGAAAAGGAGGCCGAGAAAGCTTACTCTCGTGTCAATAAATGGTCAAAATCTAACTCCAATGGACAAGTGGAGACCTCCAATTAA 1473 0.4807 MGSLERDHEHANNLTQSLLPKDLPIQSQDEQPFRNKLWVETKKLWLIVGPSIFSRIAAFTMNVVTQAFAGHLGEVQLASISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMMGIYMQRSWIVLFMCCFLLLPFYVFATPLLKFLGQPDDVAEWSGVVAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLLGLVVNVVTSWLLMYVWDFGLYGAAIALDLSWWVLVFGMYAYTAYGGCPLTWTGFSMEAFSGLWEFLKLSAASGVMLWILVLMTGQLENATIAVDALSVCMTINGWEMMIPLAFFAGVGVRVANELGAGNGKAAKFATQVSVVQSTVIGLIFCALIMIFHDQFAYIFTTSTSVLEAVDDMALLLAVTILLNSVQPILSGVAVGSGWQAFVAYINIGCYYVIGLPLGILMGWVFKSGVTGIWGGMIFGGTAIQTLILIIVTARCNWEKEAEKAYSRVNKWSKSNSNGQVETSN* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0984 490 CDD MATE_eukaryotic 40 469 IPR045069 GO:0042910|GO:1990961
Apr5g0984 490 Pfam MatE 50 210 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr5g0984 490 Pfam MatE 274 425 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr5g0984 490 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 474 - -
Apr5g0984 490 PANTHER PROTEIN DETOXIFICATION 23 474 - -
Apr5g0984 490 TIGRFAM matE: MATE efflux family protein 50 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0984 Apr-Chr5 14410338 14421654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0984 K03327 - gmx:100500204 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0984 5 14410338 14421654 Apr5g0984 5 14410338 14421654 ECH