Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0976 ATGCTTCACCAACCATTACTCTGCAGTTCAAGAATCGCCACACAATCCACACTCTTCGCTTCGGTTCTTTCTGGCGGCAATAACGCCGCGCGTAATTCATTTGCCGGAAATTCGCCCGTCCGTGACCTGAGATTGAAGTTTATCTCGCAAGCATCGGGAAGCAAATCGAACAGTGGACATGGAGTTTTTAGCGAGGCATGTAATCATAATGCACTCGAGACAACTAATGGTGGTGGTGGTGGTGCTCAAGAAGGAGTTCTTGAGCAAGAAGCCTCCAAAGTGATAGAAAGCAGACCATTGTGGAAAGTTTTCCCAGGTCAGGCATATCCATTGGGTGTATCAGAAGTTGACAGTGGCATCAATTTTGCTATTTTTTCACAGCATGCAACTGCTGTCACACTTTCTTTAGTCCTTCCTAGGAGGGGAAGCTTTGGCACATTGGATGGTGACTTGATGGAACTGGCTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCTCGAATCAATGTTCTGTACGGGTATCGCATAGATGGACCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCCAAACTAATTGAAGGTCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGAACATATGATTTTCACAGTTTGCCTTTTGATTGGGGAGAAAATTACAAGCTTCCAAATATTCCTCAGAAAGATCTTGTTATATATGAGATGAATGTCCGTTCATTTACAATTGATGAATCTAGTGGTTTGGAAAGAAGCATCCGTGGCAGCTATCTTGGTGTGATTGAAAAGATCCCACACCTTCTAGAGCTTGGTATCAATGCAGTGGAATTGCTACCTGTCTTTGAGTTTGATGAGTTGGAATTCCAGAGGCGTCCAAATCCTAGAGATCACATGATTAATACATGGGGTTATTCAACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCAAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCAATCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTACTCTGGCTGTGGCAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTGATCCTTGACAGTCTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTCGATTTGATCTTGCGAGTGTTCTGTGTAGAGGAATTGATGGTTCCCCCCTAAATGCTCCCCCTCTTATTAGGGCCATTGCTAAAGATGCAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGAAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGCAAAATATCGTGATGATGTACGGAAATTTATTAAGGGAGATTCTGGTATGAAGGGGAGCTTTGCAACTCGTGTTTCTGGGTCTTCTGATCTTTACAGAGTGAACAAGCGTAGGCCATATCATAGTATTAACTTTGTTGTTGCACATGATGGATTCACCTTGCATGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAACGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTGAGTTGGAATTGTGGTTTTGAAGGGGAAACTGATGATGCTAGTACAAGAGTTTTGCGGTCACGGCAAATGAAAAACTTTCATTTGGCATTAATGATATCTCAGGGTACACCGATGATGCTAATGGGGGATGAATATGGCCATACTCGCTATGGAAATAACAATAGTTATGGGCATGATACGGCCATTAATAATTTTTTGTGGGATCAGTTGGATGCACGGAAGAGTGATCACTTCAGGTTTTTCTCCAAGTTGATAAAGTACCGGCATGCACATCAAGTATTCAGTCATGAAAATTTTGCCAGCAAGAACGACATAACATGGCATGAAGATAACTGGGACAATTCTGACAGCAGATTTATTGCATTCACGCTTCATGACAAGAGTGAAGGAGATATCTATTTGGCATTCAATGCTCATGATTACTTTGTCGAAGTTCTGCTGCCCATACCTCCAAAGAAGAGGAAGTGGTTCCGTGTGGTGGACACTAATCACAAATCCCCAGATGACTTTGTCCTTGATGGTGTCCCTAGCACAAGAAACACGTACAATATAGCTCCATACTCCTCCATTCTCCTTGAGGCGAAGCTTTGA 2349 0.4215 MLHQPLLCSSRIATQSTLFASVLSGGNNAARNSFAGNSPVRDLRLKFISQASGSKSNSGHGVFSEACNHNALETTNGGGGGAQEGVLEQEASKVIESRPLWKVFPGQAYPLGVSEVDSGINFAIFSQHATAVTLSLVLPRRGSFGTLDGDLMELALDPDLNKTGDIWHICIEDLPRINVLYGYRIDGPQDWGKGHRFDSSIVLVDPYAKLIEGRRYFGDISMKLSKFLGTYDFHSLPFDWGENYKLPNIPQKDLVIYEMNVRSFTIDESSGLERSIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASQEFKQMVKALHSAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNNGQLLNYSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNAKYRDDVRKFIKGDSGMKGSFATRVSGSSDLYRVNKRRPYHSINFVVAHDGFTLHDLVSYNFKHNEANGEGGNDGSNDNLSWNCGFEGETDDASTRVLRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSKLIKYRHAHQVFSHENFASKNDITWHEDNWDNSDSRFIAFTLHDKSEGDIYLAFNAHDYFVEVLLPIPPKKRKWFRVVDTNHKSPDDFVLDGVPSTRNTYNIAPYSSILLEAKL* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0976 782 PANTHER GLYCOGEN DEBRANCHING ENZYME 91 780 - -
Apr5g0976 782 Pfam Alpha amylase, catalytic domain 279 634 IPR006047 GO:0005975
Apr5g0976 782 Gene3D Immunoglobulins 91 228 IPR013783 -
Apr5g0976 782 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 110 208 IPR004193 GO:0004553|GO:0005975
Apr5g0976 782 CDD E_set_GDE_Isoamylase_N 109 258 IPR044505 -
Apr5g0976 782 SMART aamy 258 674 IPR006047 GO:0005975
Apr5g0976 782 Pfam Alpha amylase, C-terminal all-beta domain 698 778 IPR006048 GO:0003824|GO:0005975|GO:0043169
Apr5g0976 782 SUPERFAMILY (Trans)glycosidases 237 681 IPR017853 -
Apr5g0976 782 CDD AmyAc_Glg_debranch 238 677 - -
Apr5g0976 782 Gene3D Glycosidases 234 688 - -
Apr5g0976 782 SUPERFAMILY E set domains 105 241 IPR014756 -
Apr5g0976 782 Gene3D - 689 782 IPR013780 -
Apr5g0976 782 SUPERFAMILY Glycosyl hydrolase domain 688 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0976 Apr-Chr5 14330922 14354108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0976 82 781 Glycoside Hydrolase AT4G09020 76.320 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0976 K01214 - gmx:100807545 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0976 5 14330922 14354108 Apr5g0976 5 14330922 14354108 ECH