Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0704 ATGGCCGAGGAACCCCAAAAGCCAGCTCCTGCTGAAGAGGTGGTGCCCGTTGTCCACACTGACAAGGACCCTGTTGCTCAAGCTCCAGCCGATGAAGCCGAGAAGCCGGTAGCCGCCGATGAAGCCGAGAAGCCAGCAGGAACTACTACTGAAGAAGTTGTGGTGGAAGAGGCGAAGGCCCAGCAGGCGGGTGTTGAAGAGAAGATTTCGCAATCAGTTTCGTTCAAGGAGGAGAGCAACGTGGTTGGCGACCTCCCCGAAGCGCAAAAGAAAGCCCTCGATGAACTCAAGAAGCTCATTCAAGAAGCGCTTAACAAGCACGAGCTTAGTGCTCCCCCACCTCCCAAGGCCCCCGCTGCAGAAGCTGAGAAGAAGGAAGATGTGGCGGCAGCAGAAGATGCTGAGAAGAAGGAACAAGAAGTGGCAGCCGAAGAAGTGGAGAAGAAGGAAGAGGCGGTGGCCACAGAAGAAGTAGAGAAGAAGGAATTAGAAGTGACGGAAAAAGAAGAAGAGAAGAAGGAATCAGAAGTGGTGGCGGTACAAGAAACGGAGAAGAAAGAATTAGAGGTGGGAGGTGGAGAAGAAGCGGAGAAGACGGAATTAGAGGTAGTGGCAGAAGAAGTAAAAGAAGTGGAAAAGAAGGAAGTAGAAGCGGGAGGAACAGAAACAGAAGAAAAAGAAGGGGAGAAGAAAGAATCAGAGGTTGTGGGAGAAGAAGAAAAAGAAAAAGAAGTAGAGAAGAAGGAAGTGAGCCCTGAGGAAGTTGAGATATGGGGAATTCCCCTGCTGGCGGACGAGAGGAGCGACGTGATTCTGCTGAAATTCTTGAGAGCGAGGGATTTCAAGGTGAAGGATGCGTTCACAATGATAAAGAACACGGTGCGTTGGAGAAAGGAATTCGGAATCGACGCTCTGGTGGAGGAGGACCTGGGAAGCAATTGGGACAAGGTGGTTTACTCTCACGGATACGACAAGGAAGGGCACCCTGTTTGCTACAACGTGTTTGGGGAGTTTGGGAAGAAGGAACTGTATCAGAAGACGTTTTCGGACGAGGAGAAGCGGGAAAAGTTCATCCGTTGGAGGATTCAGTTTTTGGAAAAGAGTGTGAGAAAACTGGATTTCTCACCCTCTGCTATATCCACAATTGTGCAGGTTAACGATCTTAAAAACTCTCCTGGACTGGCTAAGTGGGAACACAGGCAGGTCACCAATCATGCCCTTCAATTGCTTCAGGATAACTACCCTGAGTTTGTGGCTAAACAGATATTTATCAACGTCCCCTGGTGGTACCTTGCCTTTGCTAGGATGATCAATGCTTTCCTCACCCAGCGGACCAAGAGCAAATTTGTTTTTGCTGGCCCATCCAAATCTGCCGAAACCCTTTTCAAATATATTGCTCCCGAGCTAGTGCCTGTTCAATACGGTGGACTCAGCAGAGAGGGGGAACAGGAATTCACCACCGCTGACCCCGTCACGGAGGTTACTGTTAAACCCGCAACTAAGCACACCGTTGAGTTCCCCGTTTCTGAGAAAAGCCATCTGCTCTGGGAAATCCGAGTTGTGGGTTGGGATGTGAACTATGGAGCTGAATTTGTACCCGCCGCTGAGGATGGATACACCGTCATAGTACAGAAGAGCAGGAAAATTGCTCCCGCTGACGAGACAGTGATTTCCAACAGCTTCAAAGTTGGTGAAACTGGCAAGGTTGTACTCACCGTAGATAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCCAAGACCAAACCCGTCTCTGAGTAA 1785 0.4958 MAEEPQKPAPAEEVVPVVHTDKDPVAQAPADEAEKPVAADEAEKPAGTTTEEVVVEEAKAQQAGVEEKISQSVSFKEESNVVGDLPEAQKKALDELKKLIQEALNKHELSAPPPPKAPAAEAEKKEDVAAAEDAEKKEQEVAAEEVEKKEEAVATEEVEKKELEVTEKEEEKKESEVVAVQETEKKELEVGGGEEAEKTELEVVAEEVKEVEKKEVEAGGTETEEKEGEKKESEVVGEEEKEKEVEKKEVSPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALVEEDLGSNWDKVVYSHGYDKEGHPVCYNVFGEFGKKELYQKTFSDEEKREKFIRWRIQFLEKSVRKLDFSPSAISTIVQVNDLKNSPGLAKWEHRQVTNHALQLLQDNYPEFVAKQIFINVPWWYLAFARMINAFLTQRTKSKFVFAGPSKSAETLFKYIAPELVPVQYGGLSREGEQEFTTADPVTEVTVKPATKHTVEFPVSEKSHLLWEIRVVGWDVNYGAEFVPAAEDGYTVIVQKSRKIAPADETVISNSFKVGETGKVVLTVDNQTSKKKKLLYRSKTKPVSE* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0704 594 SMART CRAL_TRIO_N_2 268 293 IPR011074 -
Apr5g0704 594 Coils Coil 194 214 - -
Apr5g0704 594 Gene3D GOLD domain 494 589 - -
Apr5g0704 594 Coils Coil 129 183 - -
Apr5g0704 594 SMART sec14_4 312 479 IPR001251 -
Apr5g0704 594 SUPERFAMILY CRAL/TRIO N-terminal domain 74 309 IPR036273 -
Apr5g0704 594 Pfam CRAL/TRIO domain 316 476 IPR001251 -
Apr5g0704 594 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 491 586 IPR036598 -
Apr5g0704 594 MobiDBLite consensus disorder prediction 25 47 - -
Apr5g0704 594 MobiDBLite consensus disorder prediction 106 247 - -
Apr5g0704 594 MobiDBLite consensus disorder prediction 1 83 - -
Apr5g0704 594 CDD SEC14 314 477 IPR001251 -
Apr5g0704 594 Pfam CRAL/TRIO, N-terminal domain 243 292 IPR011074 -
Apr5g0704 594 SUPERFAMILY CRAL/TRIO domain 317 478 IPR036865 -
Apr5g0704 594 Gene3D - 312 493 IPR036865 -
Apr5g0704 594 ProSiteProfiles GOLD domain profile. 458 589 IPR009038 -
Apr5g0704 594 PANTHER PATELLIN-1 1 594 IPR044834 GO:0008289
Apr5g0704 594 Gene3D - 229 299 - -
Apr5g0704 594 PANTHER PATELLIN-LIKE PROTEIN 1 594 - -
Apr5g0704 594 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 307 482 IPR001251 -
Apr5g0704 594 MobiDBLite consensus disorder prediction 119 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0704 Apr-Chr5 9595694 9598314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0704 272 456 Acyl Lipid Metabolism Gene Families AT5G47730 27.551 4.18e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0704 - K19996 gmx:100794623 598.586