Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0596 ATGGATGGTTACGAAGCTACAAGGATTGTGTTCTCAAGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATCATGGGTGTGCTTCTACTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCTGAAGCTATTGTTCACTCTGTGATTGTCAAAGCCCGCAAAGAGTTGGGCTTACCCTCGAACTCTCCGCCAACACCTTCCACTCCTCCTTCTCCTTCTCCCTTCCTTTCAAGACAAAACTCAACTTCTTCAAGACTCAGTGGCATCAACCTTCCTCCTGCAGTCACTATTCCAAACCCTTCTTCTACTTCAGCTTCTTGGGCTACTATGTCTGATGATTTGATGAGTCCCAACAACTTGGTTGTTGGTTCTTCCACTTCTTCATCTTCCTTACCCTTTTATGCAAACGGAGGCTCAGATCCAATTGATGATTTCCAGCTTCAAGACCAGCTTTCTTTCTTGAATGATGGCTCTCCAACAACTGCTGATCCTACTCTCTTTCCTTCTTATGGTTGGGGAGGGTCTCTGCACCGTAGGAGTTGTTCTGTCAATGATGCTTGTTTGGGTTCTGAGGACCCTAATTCTGGCTTGGGGTGGAAGCCTTGCCTTTACTTTGCCAGAGGGTACTGTAAAAATGGCACTAGTTGTAGGTTCCTTCATGGGGGACTTGGAGATGCTGATGGTGCTGCAATGGTTGGCTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAGTCTGCTCAGCAACAAAGACTGGCTGCTGCTTCTCAGCTCATGGCATCTTCTCTTCCATACTCCCCAAAGTGCATGAATTTCCTCTTGCAGCAGCAGCAGCAGAATGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAGTTTGGAAGATCCAGGCTTGAAAGGAATGATTTTTCTTTGAACAGTCCTGGGATGGTGAACCCAGCTTCTAGGCAGATCTACTTGACTTTCCCGGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGATGTGAGGATCCCATATCAGCAGAAGCGCATGTTTGGTTTTGTTACCTTTGTTTATCCGGAGACAGTGAAGCTCATTCTATCAAAAGGAAACCCTCATTTTGTGTGTGATGCTAGGGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTGCCAGACAAGAAGCAGCAGCAACAGTTGGATAGAGCAGATTTTTCACCATGTGGCACTCCTACAGGACTAGATGCTAGAGACCAATATGATCTTCAACTTGGAGGCAGAATGTTTTACAATACTCACGACATGCTGTGGAGGAGGAAGTTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAACTCCAAAGTAGGAGGTTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGCGCACTCTCCACTGGAAGTCCAATTCCATCCCCTACCCACTCTCCTAACATGTTCCATCAAAATCTTGTTCTTCCTTCATTTCATGGCAGTTCAGAGGCCCCAGAGGAGAGTGGTTCAAGTTCTGCACCAGCTAGTACTGCATCAGTTTCTGCTGGTCAGCAGCAAGTCAACATTTCAGCTGGCAAGGAAGTGGTGGTCAATGGAGAGAGTGGATGCAATGAAGGCAATGGCAAGCTGAACTCTAGCCATGAAGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGAGACTTCATCATGGCTCCCTTCTCCAATGGACCTAATGAGGCCATTGATTCAGATCCCTCAGCTGCATCTGCCAACTCCAAATTTGGTACTAACACATTACTTCCAGCAGCATCTGCTTTAGACATGGGGTCATTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTGGGCATGGAACTATTGGGATGTTTGCAGGCACCGGTGGAGCAATTGGCATTTAG 2031 0.4633 MDGYEATRIVFSRIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEAIVHSVIVKARKELGLPSNSPPTPSTPPSPSPFLSRQNSTSSRLSGINLPPAVTIPNPSSTSASWATMSDDLMSPNNLVVGSSTSSSSLPFYANGGSDPIDDFQLQDQLSFLNDGSPTTADPTLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAMVGSPSKIEMMEQCHELFRSKSAQQQRLAAASQLMASSLPYSPKCMNFLLQQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQLDRADFSPCGTPTGLDARDQYDLQLGGRMFYNTHDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFHQNLVLPSFHGSSEAPEESGSSSAPASTASVSAGQQQVNISAGKEVVVNGESGCNEGNGKLNSSHEDRDLQECLEHNLPDSPFASPTKAAGDFIMAPFSNGPNEAIDSDPSAASANSKFGTNTLLPAASALDMGSFKSYNCQIPRFSSGHGTIGMFAGTGGAIGI* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0596 676 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 390 IPR000504 GO:0003723
Apr5g0596 676 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 664 - -
Apr5g0596 676 SUPERFAMILY CCCH zinc finger 204 226 IPR036855 GO:0046872
Apr5g0596 676 SMART rrm1_1 334 404 IPR000504 GO:0003723
Apr5g0596 676 Gene3D - 331 427 IPR012677 -
Apr5g0596 676 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 664 - -
Apr5g0596 676 MobiDBLite consensus disorder prediction 61 106 - -
Apr5g0596 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 409 IPR000504 GO:0003723
Apr5g0596 676 Gene3D - 195 293 - -
Apr5g0596 676 MobiDBLite consensus disorder prediction 493 547 - -
Apr5g0596 676 ProSiteProfiles Zinc finger C3H1-type profile. 201 228 IPR000571 GO:0046872
Apr5g0596 676 MobiDBLite consensus disorder prediction 496 547 - -
Apr5g0596 676 CDD RRM_AtC3H46_like 335 404 IPR034365 -
Apr5g0596 676 MobiDBLite consensus disorder prediction 410 433 - -
Apr5g0596 676 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 226 IPR000571 GO:0046872
Apr5g0596 676 SMART c3hfinal6 203 227 IPR000571 GO:0046872
Apr5g0596 676 MobiDBLite consensus disorder prediction 79 106 - -
Apr5g0596 676 SUPERFAMILY RNA-binding domain, RBD 345 422 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0596 Apr-Chr5 8096644 8102602 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0596 - - gmx:100801807 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0596 5 8096644 8102602 Apr5g0596 5 8096644 8102602 ECH