Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0590 ATGGTTCCTTCAATGAAAATGAATTCCCTTGTTGCAAAAACCAAACTTTACCCTCCAATGGATTCAAAAACCAAAATTTGTACACCAATGGATTCAACTTGTAGCAGCAGTGGCAGTAGCTGTAGCAGCATCAGCAGCGAGAGCGATGAGAGTCCCTTCTCTTCTCAGAGGTTGCAACTTCCATGCATTCCCGTTTCTGGGTTCTCCCATTCTCACCGATCATTGGCGGTTCTTTCAGGCCACGTTGGCTCAGTTTCTTCCTTGGCCCTGTGCGGCGAATTCATTCTAAGTGCCTCACAGGGTAAGGATATCATAGTGTGGCAACAACCAGATTTAAGGTTGTTTGCAAAGTTTGGCCAAGGTGATGGGTCTGTGAAAGCCCTTGCAACGGTTGGAAACAAGGTTTTCACTGCACATCAAGATAGCAGGATCAGGGTTTGGAAGGTGTCAAGGAGTTCAGAGAATGTGTTCAAGCTTGTTGACACTCTTCCCACAACCAAGGACTATTTGGGCAAGTTCATGAAGCAAAGTAACTATGTCCAAACTCGGAGGCACCATAAGCGTTTGTGGATTGAACATGCAGATAGCATTTCTTGCTTGACAGTTTACAATGGGTTTATTTACTCTGGATCATGGGATAAGACCCTTAAGGTGTGGAGGCTCTCGGATTTAAAGTGTTTGGAGTCTATTAAGGCTCATGATGATGCCATTAATGGGTTGGTGACGTGTAAAGGGGTTGTGTATTCTGCTTCTGCTGATGGGAAGATTAAGGCTTGGGGAAAGGAGGGGAAAGGGTCACATTGTTTGAGAGGGGTTTTGGAGGGTCATAAAGATGTTTCCTTTAATTCTGTCATTGTTTCTGATGATGGGAAATGGGTTTACGGAGGGGGTTCGGATGGTTTTGTTATGGGGTGGGAGGGGAGTGGAAGTGGGAGTTTTGAGAGTTGGAAGCTTGTCTCTGAGACCAAGGCACATGAAATGGCTGTTTTGTGTATGTGCCTAACGGGGGAGGTTTTGTGCAGTGGCTCAGCGGATAAAACCATTGGTATTTGGAGGAGAGAAGCTTTTGGTAAGCTTTGTAAAGTTGGGATCATAAGTGGCCATGAAGGGCCAGTGAAGTGTTTGCAAGCCTCATCTAATAGAATTGGTGGTGGCTTTTTACTATACAGTGGAAGCCTTGACAAGAGCGTGAGAGTTTGGTGGGTTCCAAGGCATAATAATGCACAAATAGAGGACAACACTACAACACTCAATGAATCCATCATCCAGTGTTAG 1275 0.4518 MVPSMKMNSLVAKTKLYPPMDSKTKICTPMDSTCSSSGSSCSSISSESDESPFSSQRLQLPCIPVSGFSHSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGFIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVTCKGVVYSASADGKIKAWGKEGKGSHCLRGVLEGHKDVSFNSVIVSDDGKWVYGGGSDGFVMGWEGSGSGSFESWKLVSETKAHEMAVLCMCLTGEVLCSGSADKTIGIWRREAFGKLCKVGIISGHEGPVKCLQASSNRIGGGFLLYSGSLDKSVRVWWVPRHNNAQIEDNTTTLNESIIQC* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0590 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 400 - -
Apr5g0590 424 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Apr5g0590 424 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Apr5g0590 424 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Apr5g0590 424 CDD WD40 74 400 - -
Apr5g0590 424 PANTHER OS01G0946100 PROTEIN 20 415 - -
Apr5g0590 424 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 415 IPR045182 -
Apr5g0590 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 229 IPR001680 GO:0005515
Apr5g0590 424 Pfam WD domain, G-beta repeat 192 219 IPR001680 GO:0005515
Apr5g0590 424 Pfam WD domain, G-beta repeat 271 305 IPR001680 GO:0005515
Apr5g0590 424 Pfam WD domain, G-beta repeat 362 400 IPR001680 GO:0005515
Apr5g0590 424 Gene3D - 63 169 IPR015943 GO:0005515
Apr5g0590 424 SUPERFAMILY WD40 repeat-like 74 406 IPR036322 GO:0005515
Apr5g0590 424 Gene3D - 178 275 IPR015943 GO:0005515
Apr5g0590 424 Gene3D - 276 421 IPR015943 GO:0005515
Apr5g0590 424 SMART WD40_4 111 148 IPR001680 GO:0005515
Apr5g0590 424 SMART WD40_4 266 306 IPR001680 GO:0005515
Apr5g0590 424 SMART WD40_4 183 220 IPR001680 GO:0005515
Apr5g0590 424 SMART WD40_4 315 352 IPR001680 GO:0005515
Apr5g0590 424 SMART WD40_4 358 401 IPR001680 GO:0005515
Apr5g0590 424 SMART WD40_4 223 260 IPR001680 GO:0005515
Apr5g0590 424 SMART WD40_4 71 108 IPR001680 GO:0005515
Apr5g0590 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 400 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0590 Apr-Chr5 8018157 8019431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0590 180 400 Miscellaneous Gene Families AT5G08390 24.561 4.03e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0590 - - gmx:100803028 661.759