Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0577 ATGGCTACTGCTGCTGTTATTGGACTCAGTGGAGGAAAGAGGCTCTTGAGTTCATCTTACCATTACTCTGATATAATAGAAAAGCCTTCTTATGGCAGTGACTTTGGATTCACACACTATCATCTTGCTCCTACAAAATATGTAATAGTTGCCAAGAAGTCATCCAACTATCCTCCAACTTTTCCAACGTCCAACCGGCAGAATCAGTCCATCAAGGCTCTTAAGGAACATGTTAATGGTGTTCCTGCTATTGCGGATGCATGGTTTCAGAGTTACAATTCTAATGAGTTAGAGGTGGAAAGCTCTGAACTGGATTATTCAGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAATCTTTCCTTTGAAAGGGAAGTGTTAACTGAGCATTCACGAAAAGAAAAAAGCCGTAGGAAAGTGGCTGTAACTTGTTCTGGGGTGTCTGCAAGGCAAAGAAGAATGAATTCTAAGAGGAAGACTGTGCTGAGGTCCATAATCAGTCCAGAGCTGCTTCAAAACCGTTTGAAGGGCTATGTGAAAGGTGTAGTGAGTGAAGAATTACTTTCTCATGCAGAAGTTGTAAACCTATCAGAGAAAATTAAAGTTGGGCTTTCCTTAGAGGAGCATAAATCCAGAATGAAGGAAAAACTAGGATGTGAACCCTCTGATGATCAAATTGCTACTTCATTGAAGATTTCTCGTGCTGAACTACGAGCAAAAATGATAGAGAGTTCTCTGGCCAGAGAAAAGTTAGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAGATATGACAACCTAGGTGCAGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGCGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAGGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTGGTTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTACATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCATTACTCCAACTATTGATAGGATTGCGAACCACCTTAACATTTCTCAAAAGAAAGTCAGAAATGCTACTGAGGCAGTCAGCAAAGTTTTCTCGCTCGATAGGGAAGCATTCCCCTCTCTGAATGGTCTCCAAGGAGAAACTCATCATAGTTATATTGCAGATAATCGCCTTGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCATTAAAGGATGAAGTGAACAAACTCATTAATGTGACCCTTGCGGAACGAGAGAGAGAAATTATTCGTCTTTATTATGGGCTGGATAAAGAATGTCTTACGTGGGAAGACATTAGTAAACGGATAGGTTTGTCAAGAGAGAGAGTGAGGCAAGTTGGACTTGTTGCGTTGGAGAAACTAAAACATGCTGCCAGGAAGAGAGAAATGGAGGCCATGCTATTGAAACATTAA 1488 0.4079 MATAAVIGLSGGKRLLSSSYHYSDIIEKPSYGSDFGFTHYHLAPTKYVIVAKKSSNYPPTFPTSNRQNQSIKALKEHVNGVPAIADAWFQSYNSNELEVESSELDYSVEALLLLQKSMLEKQWNLSFEREVLTEHSRKEKSRRKVAVTCSGVSARQRRMNSKRKTVLRSIISPELLQNRLKGYVKGVVSEELLSHAEVVNLSEKIKVGLSLEEHKSRMKEKLGCEPSDDQIATSLKISRAELRAKMIESSLAREKLAMSNVRLVMSIAQRYDNLGAEMADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIANHLNISQKKVRNATEAVSKVFSLDREAFPSLNGLQGETHHSYIADNRLENIPWNGVDEWALKDEVNKLINVTLAEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0577 495 Pfam Sigma-70 region 2 258 325 IPR007627 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 Gene3D RNA Polymerase Primary Sigma Factor 57 326 - -
Apr5g0577 495 Pfam Sigma-70 region 3 335 405 IPR007624 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 495 - -
Apr5g0577 495 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 252 482 IPR014284 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 Gene3D - 327 378 IPR036388 -
Apr5g0577 495 PRINTS Major sigma-70 factor signature 280 293 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 PRINTS Major sigma-70 factor signature 304 312 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 PRINTS Major sigma-70 factor signature 433 445 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 PRINTS Major sigma-70 factor signature 453 468 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 PRINTS Major sigma-70 factor signature 468 479 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 CDD Sigma70_r4 422 480 - -
Apr5g0577 495 Pfam Sigma-70, region 4 432 481 IPR007630 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 495 - -
Apr5g0577 495 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 410 485 IPR013324 -
Apr5g0577 495 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 179 326 IPR013325 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 ProSitePatterns Sigma-70 factors family signature 1. 280 293 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g0577 495 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 328 384 IPR013324 -
Apr5g0577 495 Gene3D - 411 489 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0577 Apr-Chr5 7889726 7894849 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0577 K03086 - gmx:100801884 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0577 5 7889726 7894849 Apr5g0577 5 7889726 7894849 ECH