Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g0575 | ATGGCTGTTGAGGCTTCTGATAAACCAAATTTACCGCATGATTTTGATGATGATGATGATGGGCCAATAATTCTGAAAAGGTACTCATCAACTAAGAAAAATCAATTGCATTCGGAAGTCAGGAAGTCAAGTTCTCACAGTCATGATGGACAGTCATATAGACAAAATTTGGATGCGCCTTCTTCAAATGGCCAAACTTCTAGCATACAAAAAGTTAGTAATGTCTCATCTGCCAAGACATCGTCCGGGAAGAATTCAGTAGGTAGTTCAAAAGCATCAAATTCGCTTGTCAATGCCTCCTCTATGAAGTTGCCTGTAGCAAATTTGAAATCATCTTCATCAGGAGATAAATCAAAGGCTCTTCTGGAACAGAAAATGTCCATTAAGGTTAAGGAGGAAACAAAATCTATTGAACATTGTGCTAAAACTTACTCTGAAGATTCAGATGATGAGGATAATAAACCGTTGAGTGTTAGGTTGAAAAACTCTAACCATGATAACAAAGTGACCCCTGTTGTTGTCAAGAAATCTTCTGAAGACTCTGACGATGATGATGATATTCCTTTGTCAGCAAAGTTATTCCAGAATTCCAAAGTGGGAACATCTAGCAGTAACCATCGTGAATCTGATCAGAAGAAGCCTATTCCAAAAGTTCAGAAAGGGAAGCTAAATGGTTCCAGCACAAGTAATAAACAGGAAAGGGGATCTACATTGCCAGTTAAGAGACCACTAGATAATAGTAATTCCTCACAAACTTCTGTTAAGAAATCAAAGGTCTCAGATCCAGCTGCATCTATCAAAACTAAGGCAGTCTCTGTGAAACGAGAGATGAAGGTAGAGGAGGATGATGATGATGATATTCCTATTTCCCAGCGAATAAAGAAGTCAGCCACATCAGGTGATAAATCATCCTCGACCAAGAAGGTGTTGGCAAAGGTTACTAAAGTTAACAAGTCTAGTTCAACACCTTTTAAGAAACAGGCCAAAAAGAAGTTAAAAAAATCAGGCAGTGGTTCAGAATATTCCAAATCTACAAAACTTCTCCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTAATTTGGTTCACAATGGTGTCATTTTCCCTCCTGCTTACCAGCCGCATGGGATAAAGATGCTCTATAAGGGAAAACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCTGTCATGCGAGATACGGATTACATGCATAAAGACAAGTTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTGCTTGGAAGAAATCATGTAATTCAGAACTTGAAAGATTGCGACTTTACTCCAATCTATGACTGGTACCAAAGTGAAAAGGAAAAGAAGAAGCAAATGACTACAGAAGAGAAGAAGGCATTGAAGGAAGAGAAAGTGAAACAAGAGGAGAAATACATGTGGGCTATGGTCGATGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGAGGAGAGCATCCCAAGATGGGAAAATTGAAAAAGCGCATTCGTCCAAGTGATATCACAATTAATATAGGAAAGGATGCCCCAATTCCAGAATGTCCTATTCCTGGTGAAAAGTGGAAGGAGATAAGACATGATAATACAGTCACTTGGTTAGCCTTTTGGAGTGATCCTATCAATCCAAAGTTATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCCTTGAAGGGGCAAAGCGACAAGGAAAAGTATGAGAAAGCTAGGATGTTAAAGGGTTACATAGCAAATATTAGGGCTGCATACACAAAAGATTTTACGAGTAAAGATATTACAAAGCAGCAAATTGCTGTTGCAACTTATCTTATTGATAAATTAGCTCTAAGGGCTGGCAATGAGAAGGACGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAAGCCCCCAACAAATTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAAAATACGGTTGAGGTTGAGCTTTCTGTTTATAATGCAATTTTGAAGTTTCAAAAAGATAAACGCCCAGGTGATGATCTTTTCGACAAGCTGGATACAAATAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGTTTAACGGCAAAAGTCTTCCGTACATTCAATGCATCTATCACATTGGATGATATGTTGAATAAGGAAACTAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAACATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCATGGTGCACAAATGTCAAGGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAACGGATTTGGACAGGGCAAGGAAGGGAAAGCCTCCTTCAAAGAGTTCAGATGGGAAGAGAAAAAAGAACTTAAGTCCTGAAGCGCTAGAGAAAAAGATATCCCAAACCAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTGAAAACGGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCCAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATCGAAAAGATTTTCAACAAATCTCTGCTGGCGAAGTTCTGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA | 2703 | 0.3899 | MAVEASDKPNLPHDFDDDDDGPIILKRYSSTKKNQLHSEVRKSSSHSHDGQSYRQNLDAPSSNGQTSSIQKVSNVSSAKTSSGKNSVGSSKASNSLVNASSMKLPVANLKSSSSGDKSKALLEQKMSIKVKEETKSIEHCAKTYSEDSDDEDNKPLSVRLKNSNHDNKVTPVVVKKSSEDSDDDDDIPLSAKLFQNSKVGTSSSNHRESDQKKPIPKVQKGKLNGSSTSNKQERGSTLPVKRPLDNSNSSQTSVKKSKVSDPAASIKTKAVSVKREMKVEEDDDDDIPISQRIKKSATSGDKSSSTKKVLAKVTKVNKSSSTPFKKQAKKKLKKSGSGSEYSKSTKLLPSSGDGQKKWTNLVHNGVIFPPAYQPHGIKMLYKGKPVDLTPEQEEVATMYAVMRDTDYMHKDKFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWYQSEKEKKKQMTTEEKKALKEEKVKQEEKYMWAMVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKDAPIPECPIPGEKWKEIRHDNTVTWLAFWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKGYIANIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELSVYNAILKFQKDKRPGDDLFDKLDTNKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHGAQMSRLTEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKRKKNLSPEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF* | 901 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g0575 | 900 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 357 | 568 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 352 | 569 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 221 | 259 | - | - | |
| Apr5g0575 | 900 | Coils | Coil | 776 | 803 | - | - | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 795 | 830 | - | - | |
| Apr5g0575 | 900 | Gene3D | Topoisomerase I; Chain A, domain 3 | 571 | 719 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 49 | 96 | - | - | |
| Apr5g0575 | 900 | SUPERFAMILY | DNA breaking-rejoining enzymes | 571 | 897 | IPR011010 | GO:0003677 | |
| Apr5g0575 | 900 | PANTHER | DNA TOPOISOMERASE I | 114 | 900 | - | - | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 292 | 323 | - | - | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 271 | 291 | - | - | |
| Apr5g0575 | 900 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 571 | 796 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 9 | 48 | - | - | |
| Apr5g0575 | 900 | SMART | topeu | 497 | 873 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Apr5g0575 | 900 | Gene3D | DNA Topoisomerase I, domain 2 | 353 | 568 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Apr5g0575 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 497 | 506 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 613 | 632 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 636 | 650 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 658 | 674 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 716 | 730 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 853 | 864 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 338 | 354 | - | - | |
| Apr5g0575 | 900 | Gene3D | - | 373 | 456 | IPR013034 | GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | Coils | Coil | 827 | 847 | - | - | |
| Apr5g0575 | 900 | Coils | Coil | 446 | 474 | - | - | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 141 | 161 | - | - | |
| Apr5g0575 | 900 | Pfam | C-terminal topoisomerase domain | 832 | 900 | IPR025834 | - | |
| Apr5g0575 | 900 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 846 | 864 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | CDD | Topo_IB_C | 577 | 770 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Apr5g0575 | 900 | PANTHER | DNA TOPOISOMERASE I | 114 | 900 | - | - | |
| Apr5g0575 | 900 | MobiDBLite | consensus disorder prediction | 141 | 354 | - | - | |
| Apr5g0575 | 900 | Gene3D | - | 720 | 900 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g0575 | K03163 | - | gmx:100799837 | 1448.34 |