Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0564 ATGGGAGTTATTGGCTTTGAAATTAATGGCAATTCTGCTTCTGCATATGTTTTGCATTATGGCGCCAATTCGTTTTCTTCCTATGCGGTTCCTATTTCTTTGAAACCATTTTTTGGTTATGCTTTGAACACGAGGGTTGCAAAGAAGTTTCGGGTCTCTCATGTTCGAAAGCTCAATTGTGGGCCAGTTGTTGTTTCACTGAATAGTGGCTCTAATGCTGGGTTGATTAGTGAGGGGTTGGAATTTAAGCCATCTTTCGACGAATATTTGAAGGCTATGGAATCTGCCAAAACTGTTAGGGGCAAGAAGCATGCTTCTACTACTCAAAAACAGAAGGCGGTGGAAAAAGGTGTTGAAGGGAATTACAATAAAAAATCTACTAGGGTTGGAGAGAAAATTGATAGAAAAGATGGGTTTGAAGGTGCTAAAGATGACGGGGCATTAAGAGCTGATGAACTAGTTGTGTACAAAGAAGGCTCCTCCACTAGTAGTGGTAAGGTCAGAGGAATATCAAATAAAGGATTTCAAAATGAATATGATGGGAAACAAAGCAACCTTGATGTAAAGGCTAAGCAGAGAAACGGGGCAAAGGTAAGACAAGCTGGCTGGTTGAAACACCAGAGTCATAGTTTAGAATGGGAATCTGATGGCTGCAGTGGGATTAAGAATCAAGACCAAAGTGGAAGTGGAAGTGGAAGGATAAGCAAGAACACAGTTAGGTCTAATTTGGATGATAGGGGTGGGAATGTCATAGAGAGGGAAGTGTCTCATCATTTATATTCTTCAAAAATGTCAGAAAATAAAGTTGTTAGTTTCAGACAGAGGGATTACAACACACAGGGAAAAACCCCTAGCGGAGACAAAATTGTGGCTAACCAAAAAGCAATGGATAGAGTACATGGTAGAAAACATACTGAAAGTGGAAGTTTGATGAATATAAATGTACAGTCAAAAGTCAAATTGAATGGAAGCCGCAAGCGTTTCATTGATAGGGGTTATAATTCTGACAGCGTGGAGGTGGACCGAGCAGCATTCAAGAATCTAGAGGACCCTGACAATGTTATCAAAAAGTTGCAATTTTCACATACAGTGATGGAGGAGAGAATCCAAAAGCTAGCCAAATCGTTGAATGGTGCAGATATCAATCTACCTGAATGGATGTTTTCTAAGATGATGAGAAGTGCAAGGCTCAAATTTTGTGACTATTCTATAACAAGGGTTATAATCATCTTGGGGACACTTGGAAACTGGCGGCGAGTGATACAGGTCATTGAATGGCTTCAAAAGCGTGAACGTTTCAAGTCCCATAAGCTAAGGCATATATACACTGCTGCTCTTGATGCACTTGGAAAGTCAAGGAGGCCTGTAGAGGCACTAAATGTATTTCATGCTATGCAGCAACACATGTCCACTTATCCTGATTTAGTAGCGTATCATAGTATTGCTGTTACTCTTGGACAAGCAGGATACATGAAGGAACTCTTTGATGTGATTGATATTATGCAATCACCACCTAAGAAGAAGTTCAAAACAGGGATTTTTGAGAACTGGGACCCAAGACTGGAACCAGATATTGTAATTTATCATGCAGTCCTTAATGCTTGTGTTAAGCGGAAACAGTGGGAAGGGGCCTTTTGGGTTTTACAGCAGTTAAAGAAGCAAAGCCAACTACCTTCTGCTGCAACTTATGGCCTAGTTATGGAGGTGATGTTTTCCTGTGGCAAGTACAACTTGGTGCATGAATTTTTCAGAAAACTTCAGAAGTCTTCCCTTCCCAATTCATTGACATATCGAGTTCTTGTAAATACACTATGGAAAGAGGGAAAAACGGATGAGGCTATATTGGCTGTCCAAGAGATGGAAAGACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTATGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATTGACAAGATATGTAAGGTTGCAAATAAACCACTTGTAGTGACATACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAATTTGTGCTCCAAATCTGGTTACTTGTAACATAATGCTGAAAGCTTACCTGGAACATGGAATGTTTCAAGAAGCCAAAGCGCTGTTTGAGCAGATGTCAGAAAGCACAAATCATCTGAGGGGAAATACTGATTACAAAATGCTGGTGATACCTGATACATACACATTCAACACCATGTTAGATGCATGCGTTGCAGAGAAGAGGTGGGATTATTTTGATTATGTGTATCAACGGATGCTGTTCCATGGTTACCACTTTAATCCAAAACGTCATCTTCGAATGATATTGGAGGCTTCCAGAGCTGGAAAGGAAGGGCCTTTGGAGATAACATGGAAGCACTTGAATGAAACAGACCGAATTCCACCAGCTCCTCTGATCAAGGAGAGGTTCTGTTTGAAGCTTGAGAAAGATGACTATGTTGCTGCTCTCACATGTATAACCAGTAATCCCCCAAATGACTTGCAGCAGTTTTCCAAGTCATCTTGGTTGAATCTTTTCAAAGAAAATTCTCACCGGTTTCAGAAGGATACACTTACTAGACTAATGAATGAGGCCAGCAATATAGTTTCCAATATTAGTTCCCCTAATCCAACACTGGAGTATTTATTGAAGTCATGCAAAGAAATTTTCTTCGCCACTATTAGTGCAGCTGACAGGGATTCAGTGGAAAATGTATTTGCAGTAGACAGTAAATTGATAGCAGCCAACTCTAGATGA 2793 0.4042 MGVIGFEINGNSASAYVLHYGANSFSSYAVPISLKPFFGYALNTRVAKKFRVSHVRKLNCGPVVVSLNSGSNAGLISEGLEFKPSFDEYLKAMESAKTVRGKKHASTTQKQKAVEKGVEGNYNKKSTRVGEKIDRKDGFEGAKDDGALRADELVVYKEGSSTSSGKVRGISNKGFQNEYDGKQSNLDVKAKQRNGAKVRQAGWLKHQSHSLEWESDGCSGIKNQDQSGSGSGRISKNTVRSNLDDRGGNVIEREVSHHLYSSKMSENKVVSFRQRDYNTQGKTPSGDKIVANQKAMDRVHGRKHTESGSLMNINVQSKVKLNGSRKRFIDRGYNSDSVEVDRAAFKNLEDPDNVIKKLQFSHTVMEERIQKLAKSLNGADINLPEWMFSKMMRSARLKFCDYSITRVIIILGTLGNWRRVIQVIEWLQKRERFKSHKLRHIYTAALDALGKSRRPVEALNVFHAMQQHMSTYPDLVAYHSIAVTLGQAGYMKELFDVIDIMQSPPKKKFKTGIFENWDPRLEPDIVIYHAVLNACVKRKQWEGAFWVLQQLKKQSQLPSAATYGLVMEVMFSCGKYNLVHEFFRKLQKSSLPNSLTYRVLVNTLWKEGKTDEAILAVQEMERRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEICAPNLVTCNIMLKAYLEHGMFQEAKALFEQMSESTNHLRGNTDYKMLVIPDTYTFNTMLDACVAEKRWDYFDYVYQRMLFHGYHFNPKRHLRMILEASRAGKEGPLEITWKHLNETDRIPPAPLIKERFCLKLEKDDYVAALTCITSNPPNDLQQFSKSSWLNLFKENSHRFQKDTLTRLMNEASNIVSNISSPNPTLEYLLKSCKEIFFATISAADRDSVENVFAVDSKLIAANSR* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0564 930 Gene3D Tetratricopeptide repeat domain 646 808 IPR011990 GO:0005515
Apr5g0564 930 TIGRFAM PPR: pentatricopeptide repeat domain 699 727 IPR002885 -
Apr5g0564 930 TIGRFAM PPR: pentatricopeptide repeat domain 441 474 IPR002885 -
Apr5g0564 930 TIGRFAM PPR: pentatricopeptide repeat domain 746 777 IPR002885 -
Apr5g0564 930 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Apr5g0564 930 PANTHER OS01G0674700 PROTEIN 12 907 - -
Apr5g0564 930 Gene3D Tetratricopeptide repeat domain 512 612 IPR011990 GO:0005515
Apr5g0564 930 Gene3D Tetratricopeptide repeat domain 367 511 IPR011990 GO:0005515
Apr5g0564 930 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Apr5g0564 930 MobiDBLite consensus disorder prediction 214 247 - -
Apr5g0564 930 Pfam Pentatricopeptide repeat domain 663 708 IPR002885 -
Apr5g0564 930 Pfam Pentatricopeptide repeat domain 521 570 IPR002885 -
Apr5g0564 930 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 727 IPR002885 -
Apr5g0564 930 PANTHER OS01G0674700 PROTEIN 12 907 IPR044645 GO:0009658
Apr5g0564 930 MobiDBLite consensus disorder prediction 214 244 - -
Apr5g0564 930 Pfam PPR repeat 441 467 IPR002885 -
Apr5g0564 930 Pfam PPR repeat 596 625 IPR002885 -
Apr5g0564 930 Pfam PPR repeat 746 775 IPR002885 -
Apr5g0564 930 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Apr5g0564 930 SUPERFAMILY TPR-like 509 727 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0564 Apr-Chr5 7747468 7754048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0564 544 818 Glycosyltransferase AT1G05670 22.581 6.18e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0564 - - aprc:113864568 1850.87