Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0539 ATGAGTGAAAATTTGAAGGAAAGAGTGAATGCTTTAGGAGAGCTTCTCAAAATTGGTGGGGCTGAGGTGGGTAGGAAGATGAGTGCTGGCATGAGTTCTATGAGCTTCAAGGTGAAGGAGTTTTTCCATGATTCAAGGCAGGTTGATAAACTAGTTGGTGATGCTACCTCTGAGGCACTTGATGAGCCTGATTGGGCTATCATTCTTCATCTATGTGACTTGATCAATGCTGATAAACTTAGTGCTGCTGAATTGGTACGTGCAATAAAGAAAAGGGTTGTCACCAAGAGTCCTAGAGGTCAGCTTCTGGCTTTGGTTTTGCTCGAAGCATTGGTTAAGAATTGTGACAAGGCTTTCTTGGAGGTGGCAACTGAGAGAGTGCTTGATGAGATGGTCAAGCTTATTGATGATCCTCATACTTTTGTCAATAACCGGAACAAGGCTTTGATGATGATTGAGGCATGGGGAGAGTCAACCACTCAGCTTCGCTATTTGCCTGTTTATGCAGAAACTTACAAGAGTTTGAAATCAAGGGGTATTCGTTTCCCTGTTCGTGACAATGAAAGCTTGGCTCCTATTTTTACTCCCCCTTGTTCTGCTTCGGCTCCAGAGGCTGAGGTGACTCTAGCACATCTTATTCAGCATGGTATTCTGATGCAAAGGCTTACACCTGAACGAACAAAGCAAGTTTTTGACGTTGCAAGAAATAGCATTGAGCTTCTCTGTACTGTGTTATCTTCTTCAATGCAACAAGATGTTTCGAAGGATGAATTGACAATCACACTAGTGCAACAGTGCCGTGCGTCCCAGTCTAGTGTCCACAGAATAATTGACACTGCTGGAGATAATGAAGCAGTGCTTTTTGAGGCCTTGAATGTGAATGATGAGATTCAGAAGATTCTCTCCAAATATGAAGAGTTAAAGGAGAAGAATAAGAAGAAGAGTGCATTTGAACCTAAACCGGCTATGATACCTGTTTCTATTGAGCCTGATGAGTCACCCCATTTTCCAACAGAGGATGCCTTGATTAGAAGACCAGCTAGTTCAAGAGTTAGAGTTCATGGAGGGAGCCATGATGAAATGATGGATGATCTTGATGAGATGATTTTTGGTAAAAAGGGTGGGGATCCTTTTCAAGATCCAAAGAAACAACAAACATCAAAAGATTATGATCTCATCTCCTTCTAA 1188 0.4209 MSENLKERVNALGELLKIGGAEVGRKMSAGMSSMSFKVKEFFHDSRQVDKLVGDATSEALDEPDWAIILHLCDLINADKLSAAELVRAIKKRVVTKSPRGQLLALVLLEALVKNCDKAFLEVATERVLDEMVKLIDDPHTFVNNRNKALMMIEAWGESTTQLRYLPVYAETYKSLKSRGIRFPVRDNESLAPIFTPPCSASAPEAEVTLAHLIQHGILMQRLTPERTKQVFDVARNSIELLCTVLSSSMQQDVSKDELTITLVQQCRASQSSVHRIIDTAGDNEAVLFEALNVNDEIQKILSKYEELKEKNKKKSAFEPKPAMIPVSIEPDESPHFPTEDALIRRPASSRVRVHGGSHDEMMDDLDEMIFGKKGGDPFQDPKKQQTSKDYDLISF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0539 395 Gene3D - 40 200 IPR008942 -
Apr5g0539 395 PANTHER TOM1-LIKE PROTEIN 1 1 395 - -
Apr5g0539 395 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Apr5g0539 395 MobiDBLite consensus disorder prediction 369 387 - -
Apr5g0539 395 MobiDBLite consensus disorder prediction 369 395 - -
Apr5g0539 395 ProSiteProfiles GAT domain profile. 222 309 IPR004152 GO:0035091|GO:0043130
Apr5g0539 395 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Apr5g0539 395 CDD VHS 48 177 - -
Apr5g0539 395 SUPERFAMILY GAT-like domain 181 310 - -
Apr5g0539 395 Gene3D - 225 319 IPR038425 -
Apr5g0539 395 PIRSF TOM1 32 393 IPR014645 -
Apr5g0539 395 SUPERFAMILY ENTH/VHS domain 43 183 IPR008942 -
Apr5g0539 395 Coils Coil 290 314 - -
Apr5g0539 395 Pfam GAT domain 235 309 IPR004152 GO:0035091|GO:0043130
Apr5g0539 395 Pfam VHS domain 45 179 IPR002014 GO:0035091|GO:0043130
Apr5g0539 395 PANTHER TOM1-LIKE PROTEIN 1 1 395 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0539 Apr-Chr5 7330488 7332778 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0539 - - ccaj:109799203 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0539 5 7330488 7332778 Apr5g0539 5 7330488 7332778 ECH