LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0528	ATGGCATCCGATCGTGAGCAACTCCCTCATTCCTCTCTCGCAAAGGAAGGAAAGTCATCTGGTGAGATTAGGAGTGCAAGGGAGCCTTTGCTTAATGGGGTTCATGACTCCGAAAGCTATTCCGTCTCTGCTACAATTCTCCCATTTCTCTTCCCAGCTCTGGGTGGCTTTCTATTTGGCTATGATATTGGTGCCACATCTAGTGCAACCATTTCCATTCAGTCACCAACGCTAAGTGGAATATCTTGGTACAAGTTGTCTTCTGTTGAAATTGGTCTTCTTACTAGTGGATCATTATATGGTGCCTTAATTGGCTCTGTATTGGCCTTCAATGTTGCTGACTTCTTAGGTAGAAGAAGGGAGCTGATTACATCTGCATTACTGTATCTTGTTGGAGCCATTGTAACAGCAATAGCTCCTAATTTTCCAATTTTGGTGCTTGGGAGAATTGTCTTTGGCATAGGAATTGGACTGGCAATGCATGCTGCTCCAATGTACATTGCAGAGACAGCTCCAACACCAATACGTGGACAACTAATTTCTTTAAAAGAGTTCTTTATAGTACTTGGGATTGTTACAGGATATGGAATTGGTAGCTTGTTGGTAGACACTGTAGCTGGTTGGCGGTATATGTTTGCAGCTAGTAGTCCTGTGGCAGTAATCATGGGACTTGGAATGTGGTGGCTCCCAGCTTCTCCTAGATGGCTACTTTTACGGGCTATACAGGGGAAAGGGGATGCTCAGGATTTGAAAGACACAGCAATTCGTAGTTTGATCCAGCTTCATGGTCAGGCTATTTGTGATTCTGCTCCTCAGCAAGTAGATGAGATTCTGGAAGAGCTTTCTTGTGTAGGGGAAGAAAAAGAAGTTACCTTCGGAGAAATGTTCCAAGGGAAATGCTTAAAAGCCCTTTGGATTGGCGCAGGATTGGTATTGTTTCAACAGATCACAGGGCAACCAAGTGTGCTCTACTATGCTGCATCGATCCTTCAGAGTGCAGGATTCTCTGTAGCATCCGATGCAACCCGGGTCTCTATTCTCCTTGGTTTTTTTAAGTTGATTATGACTGGAGTTGCAGTTGTTGTTGTTGATAGACTTGGAAGGAGGCCTTTACTACTTGGAGGAGTTTCAGGAATGGTGATCTCTTTATTCCTTCTGGGTTCGTATTACATTTTCTTGGATAACACAGCAGCTGTTGCTGTAGTTGGTCTGCTGTTGTACGTAGGCTGTTATCAGATTTCCTTTGGTCCAATCGGTTGGCTCATGATAGCAGAGATTTTCCCCCTGCGCCTAAGAGGACGAGGACTTAGTATAGCTGTACTTGTCAATTTTGGTGCAAATGCCCTTGTGACATTTGCTTTTTCCCCACTAGAGGAATTACTGGGAGCAGGAATTTTGTTCTACATATTTTGTGCAATAGCGGTTGCATCTCTTGTATTCATATACCTTATTGTACCAGAAACCAAAGGGCTAACACTAGAGGAGATTGAGGCCAAATGTCTCTAA	1506	0.4369	MASDREQLPHSSLAKEGKSSGEIRSAREPLLNGVHDSESYSVSATILPFLFPALGGFLFGYDIGATSSATISIQSPTLSGISWYKLSSVEIGLLTSGSLYGALIGSVLAFNVADFLGRRRELITSALLYLVGAIVTAIAPNFPILVLGRIVFGIGIGLAMHAAPMYIAETAPTPIRGQLISLKEFFIVLGIVTGYGIGSLLVDTVAGWRYMFAASSPVAVIMGLGMWWLPASPRWLLLRAIQGKGDAQDLKDTAIRSLIQLHGQAICDSAPQQVDEILEELSCVGEEKEVTFGEMFQGKCLKALWIGAGLVLFQQITGQPSVLYYAASILQSAGFSVASDATRVSILLGFFKLIMTGVAVVVVDRLGRRPLLLGGVSGMVISLFLLGSYYIFLDNTAAVAVVGLLLYVGCYQISFGPIGWLMIAEIFPLRLRGRGLSIAVLVNFGANALVTFAFSPLEELLGAGILFYIFCAIAVASLVFIYLIVPETKGLTLEEIEAKCL*	502

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0528	501	Pfam	Sugar (and other) transporter	51	498	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Apr5g0528	501	ProSitePatterns	Sugar transport proteins signature 1.	109	126	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Apr5g0528	501	TIGRFAM	SP: MFS transporter, sugar porter (SP) family	46	496	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr5g0528	501	ProSitePatterns	Sugar transport proteins signature 1.	359	375	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Apr5g0528	501	SUPERFAMILY	MFS general substrate transporter	49	497	IPR036259	-
	Apr5g0528	501	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 2	16	501	-	-
	Apr5g0528	501	MobiDBLite	consensus disorder prediction	1	23	-	-
	Apr5g0528	501	CDD	MFS_GLUT10_12_Class3_like	51	496	-	-
	Apr5g0528	501	ProSitePatterns	Sugar transport proteins signature 2.	151	176	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Apr5g0528	501	PRINTS	Sugar transporter signature	56	66	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr5g0528	501	PRINTS	Sugar transporter signature	146	165	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr5g0528	501	PRINTS	Sugar transporter signature	314	324	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr5g0528	501	PRINTS	Sugar transporter signature	401	422	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr5g0528	501	PRINTS	Sugar transporter signature	424	436	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Apr5g0528	501	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	48	489	IPR020846	GO:0022857
	Apr5g0528	501	Gene3D	MFS general substrate transporter like domains	39	499	IPR036259	-
	Apr5g0528	501	PANTHER	D-XYLOSE-PROTON SYMPORTER-LIKE 1	16	501	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0528	Apr-Chr5	6182944	6189707	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g0528	1	501	Organic Solute Cotransporters	AT5G17010	75.149	0.0	754

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0528	-		-	gmx:100801856	823.542

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g0528	5	6182944	6189707	Apr5g0528	5	6182944	6189707	ECH