LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0524	ATGGCGGAGCCGAAGCTTCCAGTGGAAGGAAAACGCAACATCCTCATCACCAGTGCCTTGCCTTACGTCAATAACGTTCCTCATCTCGGCAACATCATTGGATGTGTGTTGAGTGCCGATGTGTTTGCTCGGTACTGTCGGCTTCGGGGTTACAATATTATTTACATCTGCGGTACTGATGAGTACGGTACAGCAACAGAGACAAAAGCCATGGAAGAAAATTGCTCTCCGAAAGAGATTTGTGACAAATACTATGCTATTCACAAGGAGGTCTATGATTGGTTCAATATAAGTTTTGATGAGTTTGGGCGGACCTCATCCCCTCAACAGACTGAAGTTTGCCAAGCAATTTTTAAAAAAATATATGATAATAAATGGCTCTCGGAGAACACAATGCAGCAGCTTTACTGCGATACATGTCAAAGGTTCTTAGCTGATCGACTTGTGGAAGGTACATGCCCAACTCCTGGCTGTGAGTATGATTCTGCCCGAGGAGACCAGTGTGAGAAGTGTGGAAAGCTTCTAAATCCAACAGAATTGAAAACTCCCAGGTGCAAGGTTTGTCAAAAAACTCCTCGAATTCGTGATACAGACCACTTATTTCTTGAGCTGCCCCTATTGAAAGATAGACTGGAAAAATACATCAATGAGATGTCTGTGGTTGGTGCATGGAGTCAGAATGCTATCCAAACAACAAATTCATGGCTTAGAGAAGGATTAAAGCCTCGCTGTATTACCCGGGATCTAAAGTGGGGGGTTCCTGTTCCACATGAAAAATACAGTAACAAGGTTTTCTATGTTTGGTTCGATGCACCTATTGGATATGTCTCAATCACTGCATGCTACACACGGGATTGGGAGAAATGGTGGAAAAACCCTGAGAATGTGGAGTTGTATCAATTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTTTACTTGGAACAAATGAAAATTGGACTTTAATGAAGACTATTAGTGTTACCGAATACTTGAATTATGAAGCAGGGAAGTTTTCCAAGAGCAAAGGCATCGGGGTATTTGGTAATGATGTGAAGGATACCAGTGTTCCAGTTGAAGTATGGAGATATTATTTGCTCACAAATAGGCCCGAGGTATCAGATACGTTATTTACATGGCCTGACCTGCAAGCAAAATTAAATAGTGAGTTGCTGAATAATTTGGGCAACTTCATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCATTATTCCCTCTGTTCCTGATGATGTAAGTTGTGACTCCCATGATCTGACAAAAAAATTGACTGATAAAGTTGCTGCATATCTGGACCAGTACATAGAAGCAATGGAGAAGGTTAAACTAAAGCAAGGATTGAAAATTGCAATGAGCATATCTGGTGAGGGAAATGCATATCTGCAGGAAACTGAATTCTGGCGCCTTTACAAGGAAAATCGATCTCTCTGCTCCCTTGTTATGAAAACTGCAGTTGGGATTGTATATCTTCTTTCTTGTTTATTGGAACCATATATGCCATCTTTCACTACTGAGGTATTTAAGCAGCTAAATTTGCCTGCGGAGGTACACATTTCACTTTGTGATGACAAAGGAGATGTTGATAGGGTAAAAAGACCTTGGGATATCATAAGTGCTGGTCATAAAATTGGAACACCCAAGCCGCTGTTCAGGGAACTGAAAGATGAAGAAGTGGAGTTCTACAGGAAGAAGTTTGCTGGAAGTCAAGCTGATAGGGTTGTTCGTGCGGAGGCTGAAGCTGAAAAAGTTGCTGAGCAACTGAAGAAAACGAAAGTTTCAGATAGCACTGGAAAGAAAAAATCATCATCAAAATCATCAAATGAAGCCAAAACCAAGGCTGCTGAACTGGATATTTCCATCACAAGGCTTGATATACGGGTTGGACTCATAAAAAAAGCTCAAAAGCATCCTGATGCAGATTCACTATATGTGGAAGAGATTGATGTGGGTGAAAACCAAACCAGAACTGTTGTTAGTGGGCTTGTCAAATACATACCGCTTGATGAAATGCAGAATCGAAAGGTCTGTGTTCTTTGCAACCTAAAGCCAGCAACCATGAGGGGCATTAAATCCCAAGCGATGGTTCTTGCTGCTTCCAATGATGATCACACCAAGGTTGAGTTGGTTGAGCCTCCCAGTTCTGCTCAAGTTGGAGAAAGAATTACTTTCCCAGGTTATGAAGGCAATCCTGATGAACTCTTGAACCCAAAAAAGAAAGTTTGGGAGACATTGCAAGTCGATCTGCACACTAATGAGGAACTAGTGGCATGCTACAAAAATGTGCCACTCACCACATCATCTGGCATTTGCAAGGTTTCATCCATACGCAGTGGATCAATAAGGTAG	2400	0.4175	MAEPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNIIYICGTDEYGTATETKAMEENCSPKEICDKYYAIHKEVYDWFNISFDEFGRTSSPQQTEVCQAIFKKIYDNKWLSENTMQQLYCDTCQRFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKTPRCKVCQKTPRIRDTDHLFLELPLLKDRLEKYINEMSVVGAWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYSNKVFYVWFDAPIGYVSITACYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTNENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDVKDTSVPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPSVPDDVSCDSHDLTKKLTDKVAAYLDQYIEAMEKVKLKQGLKIAMSISGEGNAYLQETEFWRLYKENRSLCSLVMKTAVGIVYLLSCLLEPYMPSFTTEVFKQLNLPAEVHISLCDDKGDVDRVKRPWDIISAGHKIGTPKPLFRELKDEEVEFYRKKFAGSQADRVVRAEAEAEKVAEQLKKTKVSDSTGKKKSSSKSSNEAKTKAAELDISITRLDIRVGLIKKAQKHPDADSLYVEEIDVGENQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNDDHTKVELVEPPSSAQVGERITFPGYEGNPDELLNPKKKVWETLQVDLHTNEELVACYKNVPLTTSSGICKVSSIRSGSIR*	800

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr5g0524	799	MobiDBLite	consensus disorder prediction	603	624	-	-
Apr5g0524	799	MobiDBLite	consensus disorder prediction	603	629	-	-
Apr5g0524	799	Gene3D	-	149	185	IPR029038	-
Apr5g0524	799	PRINTS	Methionyl-tRNA synthetase signature	16	29	IPR033911	GO:0004825\|GO:0006431
Apr5g0524	799	PRINTS	Methionyl-tRNA synthetase signature	49	63	IPR033911	GO:0004825\|GO:0006431
Apr5g0524	799	PRINTS	Methionyl-tRNA synthetase signature	97	108	IPR033911	GO:0004825\|GO:0006431
Apr5g0524	799	PRINTS	Methionyl-tRNA synthetase signature	265	276	IPR033911	GO:0004825\|GO:0006431
Apr5g0524	799	PRINTS	Methionyl-tRNA synthetase signature	300	315	IPR033911	GO:0004825\|GO:0006431
Apr5g0524	799	PRINTS	Methionyl-tRNA synthetase signature	395	406	IPR033911	GO:0004825\|GO:0006431
Apr5g0524	799	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	21	32	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Apr5g0524	799	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	149	185	IPR029038	-
Apr5g0524	799	CDD	MetRS_core	13	383	IPR033911	GO:0004825\|GO:0006431
Apr5g0524	799	Gene3D	-	397	570	-	-
Apr5g0524	799	TIGRFAM	metG: methionine--tRNA ligase	14	534	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Apr5g0524	799	Pfam	tRNA synthetases class I (M)	14	408	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Apr5g0524	799	Gene3D	HUPs	13	396	IPR014729	-
Apr5g0524	799	PANTHER	METHIONINE--TRNA LIGASE CYTOPLASMIC	3	799	-	-
Apr5g0524	799	PANTHER	METHIONINE--TRNA LIGASE	3	799	IPR023458	GO:0004825
Apr5g0524	799	CDD	Anticodon_Ia_Met	392	528	IPR041872	-
Apr5g0524	799	Pfam	Putative tRNA binding domain	643	738	IPR002547	GO:0000049
Apr5g0524	799	ProSiteProfiles	tRNA-binding domain profile.	637	740	IPR002547	GO:0000049
Apr5g0524	799	SUPERFAMILY	Nucleotidylyl transferase	11	395	-	-
Apr5g0524	799	SUPERFAMILY	Nucleic acid-binding proteins	639	783	IPR012340	-
Apr5g0524	799	Coils	Coil	591	611	-	-
Apr5g0524	799	Hamap	Methionine--tRNA ligase [metG].	12	582	IPR023458	GO:0004825
Apr5g0524	799	Pfam	Anticodon binding domain of methionyl tRNA ligase	437	587	IPR041872	-
Apr5g0524	799	Gene3D	-	636	799	IPR012340	-
Apr5g0524	799	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	400	584	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Apr5g0524	799	CDD	tRNA_bind_EMAP-II_like	636	740	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0524	Apr-Chr5	6125856	6141380	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0524	K01874		-	gmx:100809861	1476.46