Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0522 ATGGGTCAAGCTTTTCGGAAGCTCTTCGATACCTTCTTCGGCAATACCGAGATGCGGGTTGTGATGCTTGGTCTTGATGCTGCTGGCAAAACAACTATACTGTATAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATTGGTTTCAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACAGTTTGGGATGTTGGAGGGCAAGAGAAACTAAGGGCACTTTGGAGGCACTATTTTAACAACACTGATGGTTTGATATATGTTGTGGATAGTCTGGACCGTGAGAGGTTAGGGAAAGCAAAGCAGGAATTTCAGAAAGGAGCAATGTCGCCTAGGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAATAGAAAATGGCACATACAAGGCACTTGTGCTCTTCGGGGAGATGGCCTTTACGAGGGCTTGGACTGGTTGTCCTCAACTCTAAAGGAGAGAAAAGCTGCTGGATACTCTTCAATAGGACTAGGAACTTCATCCTTCTAA 522 0.4349 MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERLGKAKQEFQKGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSSTLKERKAAGYSSIGLGTSSF* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0522 173 Gene3D - 3 109 IPR027417 -
Apr5g0522 173 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Apr5g0522 173 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Apr5g0522 173 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Apr5g0522 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 159 IPR027417 -
Apr5g0522 173 PANTHER ADP RIBOSYLATION FACTOR-RELATED 109 167 IPR024156 GO:0005525
Apr5g0522 173 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 109 IPR024156 GO:0005525
Apr5g0522 173 TIGRFAM small_GTP: small GTP-binding protein domain 16 94 IPR005225 GO:0005525
Apr5g0522 173 SMART sar_sub_1 9 155 IPR006689 GO:0003924|GO:0005525
Apr5g0522 173 Gene3D - 110 161 IPR027417 -
Apr5g0522 173 SMART arf_sub_2 1 159 - -
Apr5g0522 173 Pfam ADP-ribosylation factor family 6 109 IPR006689 GO:0003924|GO:0005525
Apr5g0522 173 ProSiteProfiles small GTPase Arf family profile. 11 155 - -
Apr5g0522 173 PANTHER ADP-RIBOSYLATION FACTOR B1C 1 109 - -
Apr5g0522 173 PANTHER ADP-RIBOSYLATION FACTOR B1C 109 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0522 Apr-Chr5 6099656 6104932 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0522 K07937 - gmx:100816276 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0522 5 6099656 6104932 Apr5g0522 5 6099656 6104932 ECH