Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0489 ATGGAGTGTAGGAGAGGAGGTTCAGACACCCTCAAGAAGAAAAGTGGTGGAAATGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAATGAGCAAGTTTTCAGCAACTTCGTGGATCATAAGTTTCATGAGTTAGATAGAGACAAAGATGGCAAACTCTCTGTGAAGGAGCTTCAACCTGCTGTTGCTGATATTGGTGCTGCTCTTGGTTTGCCTGCTCACGGCTCTAACCCTGATTCTGATCACATCTATTCTGAGGTGTTGAATGAATTCACACATGGGAAGCAAGAAAGAGTGAGCAAGAGTGAGTTCAAAGAGGTTCTCTCAGACATTCTTTTGGGCATGGCTGCTGGATTGAAGCGAGACCCAATTGTGATTCTTCGCATTGATGGGGAAGATCTTCTGGAGTTTGTTAATAGTTCAGGTTATGAAGCAGAAATGGCATCCATTTTCTCTCAGATTGAATCCCCTGATCGGTCACTTCATGATCATATAATTGAAGCTCTAGGCAAGCTCACTGTTGATCAAGGAATTCCTCCTACATCAGATTCTTGGGTCCTTACCAATATTGTGGAACCGGCACTGCTATCTAAAGATGACTCTTGTTTGGATAAGCCTGTTTCTCAAGAGACATTTTTGGAGGAATTTAAGAAAGTAGCATTGAGTGTGGCTGATCGTCTTAAGGAGCAACCTGTGATAGTTGCTCATAGTGAGAACACCTTTGATGGAAGTGGCATTAAGAGACTATTATCCAACAAGTTTGAATTAGACAAGACTTTGAACTCAGCTTTAGAGAATTTGCCTAAAGATCGAAATGGAAAGATGTCAAAGGAGTATCTAAGGGTGGCACTGGATGTGGTGGCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTCATTGGTGAAGTCTTTAAGGTGATGAATGCAGATGATGGGAAAATGGTCAAAGAAGATGAGTTGAAGAAAATTTTGACTGAAATACTGGGGAGTATCATGTTGCAGTTGGAGGGAAATCCCATATCAGTTTCTTCAAATTCGGTAGTGCACGAGCCTCTAGACTCATCTTCTACACTTTTGCAGCCATCTTCTAGTGAAGCTGCGGCATAG 1134 0.4242 MECRRGGSDTLKKKSGGNGQVLDGSNIMELVGNEQVFSNFVDHKFHELDRDKDGKLSVKELQPAVADIGAALGLPAHGSNPDSDHIYSEVLNEFTHGKQERVSKSEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVNSSGYEAEMASIFSQIESPDRSLHDHIIEALGKLTVDQGIPPTSDSWVLTNIVEPALLSKDDSCLDKPVSQETFLEEFKKVALSVADRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTLNSALENLPKDRNGKMSKEYLRVALDVVAPSAGLPPVGAIEEMDKVIGEVFKVMNADDGKMVKEDELKKILTEILGSIMLQLEGNPISVSSNSVVHEPLDSSSTLLQPSSSEAAA* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0489 377 Pfam EF-hand domain pair 44 110 IPR002048 GO:0005509
Apr5g0489 377 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 7 375 - -
Apr5g0489 377 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 7 375 - -
Apr5g0489 377 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Apr5g0489 377 SUPERFAMILY EF-hand 44 347 IPR011992 -
Apr5g0489 377 Gene3D - 41 345 - -
Apr5g0489 377 SMART efh_1 308 336 IPR002048 GO:0005509
Apr5g0489 377 SMART efh_1 40 68 IPR002048 GO:0005509
Apr5g0489 377 SMART efh_1 262 290 IPR002048 GO:0005509
Apr5g0489 377 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0489 Apr-Chr5 4972730 4977509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0489 20 373 EF-hand Containing Proteins AT4G38810 69.529 1.79e-177 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0489 - - gmx:100820516 642.499