Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0486 ATGGGAGACGAAGGTATTTTGAAGGGTGTCACAAAGCAGGTCAACCCAGGGAAGGCCTCCATATTAGCTCTTGGCAAGGCTTTCCCTCACCAACTTGTCATGCAAGATTATTTAGTTGATGGATATTTCAAGGACACAAACTGTGACAATCCTGAGCTCAAGCAGAAGCTCACTAGACTTTGCAAGACAACCACAGTGAAAACGAGGTACGTGGTTATGTCAGAGGAAATACTGAAGAAGTACCCAGAACTTGCGGTTGAAGGCATTCCCACTATAAAGCAACGGCTAGAGATATGTAACAAGGCAGTGACACAAATGGCAATTGAAGCATCCCAAGCTTGCATCAAGAACTGGGGTGGATCCTTATCAGACATAACCCACTTGGTTTATGTTTCATCCAGTGAAGCAAGACTACCTGGTGGTGACCTTTACCTAGCCACAGGACTAGGATTGAGCCCTGATATTCAACGCATCATGCTCTATTTTGCTGGTTGCTCGGGAGGTGTGGCTGGTTTACGTGTTGCAAAAGACGTAGCTGAGAACAACCCAGGAAGTAGAGTGTTGCTTGCTACTTCTGAAACTACAATTATTGGGTTCAAGCCACCAAGTGCAGATAGACCCTATGATCTTGTTGGGGTGGCACTCTTTGGAGATGGTGCTGGTGCCATGATAATTGGCTCAGACCCAATATTGGAGACTGAGAAGCCTCTCTTTGAGCTTCACACAGCAGTTCAGGAATTTTTGCCACACACTGAGAAGAAAATTGATGGGAGGCTGACAGAGGAGGGAATAAGCTTCAAGTTAGCAAGGGAACTTCCTCAAATAATTGAAGACAATGTTGAAGGATTTTGTGACAAATTAATGAGTGTTGTTGGGTTCCAGAACAAGGGGTATAACGAGCTGTTTTGGGCTGTACATCCAGGGGGGCCTGCAATCTTGAATCGCATTGAGAAGAGGCTTGATTTGTTGCCAGAGAAGCTGAGTGCAAGTAGAAGAGCTCTAATGGATTATGGCAATGCTAGCAGTAATACCATTGTGTATGTGCTGGAATATATGATAGAAGAGGGTCTCAAGATTAAAAAGGGTGGAAGTGGAGATTCTGAATGGGGCTTGATACTTGCTTTTGGACCCGGGATTACATTTGAGGGAATTCTGGCTAGGAACTTGTGTGCATGA 1176 0.449 MGDEGILKGVTKQVNPGKASILALGKAFPHQLVMQDYLVDGYFKDTNCDNPELKQKLTRLCKTTTVKTRYVVMSEEILKKYPELAVEGIPTIKQRLEICNKAVTQMAIEASQACIKNWGGSLSDITHLVYVSSSEARLPGGDLYLATGLGLSPDIQRIMLYFAGCSGGVAGLRVAKDVAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPILETEKPLFELHTAVQEFLPHTEKKIDGRLTEEGISFKLARELPQIIEDNVEGFCDKLMSVVGFQNKGYNELFWAVHPGGPAILNRIEKRLDLLPEKLSASRRALMDYGNASSNTIVYVLEYMIEEGLKIKKGGSGDSEWGLILAFGPGITFEGILARNLCA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0486 391 Pfam Chalcone and stilbene synthases, N-terminal domain 11 229 IPR001099 -
Apr5g0486 391 Gene3D - 237 388 IPR016039 GO:0016746
Apr5g0486 391 SUPERFAMILY Thiolase-like 236 387 IPR016039 GO:0016746
Apr5g0486 391 SUPERFAMILY Thiolase-like 13 232 IPR016039 GO:0016746
Apr5g0486 391 CDD CHS_like 19 385 - -
Apr5g0486 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 389 IPR012328 -
Apr5g0486 391 Gene3D - 6 236 IPR016039 GO:0016746
Apr5g0486 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 389 IPR011141 GO:0009058|GO:0016747
Apr5g0486 391 PIRSF PKS_III 8 390 IPR011141 GO:0009058|GO:0016747
Apr5g0486 391 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0486 Apr-Chr5 4955111 4956901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0486 87 376 Miscellaneous Gene Families AT4G34250 25.776 9.42e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0486 - - vun:114168705 721.079