Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0474 ATGGTCCAATCGCCGAACACGCAAGTGGCGCAGTTTCTGAACTCCGTGCTCTCCCAGCGCGGCCCCTCCGCAGTGCCGTACTCGGAGGACACAAAATGGCTGATCCGGCAGCATCTGGTTGCCCTGACCACAACCTTCCCTTCTCTGGAACCCAAAACGGCAACGTTCACCCACAACGACGGTCGTTCCGTTAATCTCCTCCAAGCCGACGGAACCATCCCCATGACCTTCCAAGGCGTCACGTACAACATCCCCGTTGTTATCTGGCTCATGGAATCTTACCCTCGCCACCCTCCCTGCGTGTACGTCAACCCCACGCGCGACATGATCATCAAACGCCCACACCCTCACGTTAACCCTTCTGGATTCGTCTCTGTTCCTTATTTGCAGGGTTGGATTTACCCTAGTTCCAATTTGGTTGAACTTGTTCTCTCTCTCAGCCACCTTTTTGCTCGTGATCCTCCCCTTTATTCCCAACGAAGACCTAACCCTAATCACTCTCCCTCTCCCTCGCCCAATTTTCCATCTTCTTCTTCTAATTTGTCCAATTCTTCATCTGGGTATCCCCCTCCCAGGACCTACCCTCCTTCCCCTTACGCTTCCCTTGGTGCTCCTGCTTCTTCCAGGGTTCACACCGAGGACCCTGCTGAGGTCTACAAGCGCAATGCCATTAACAAGCTTGTGGAGATGGTGCATCACGATGTTGCTGGGTTGAGGAAGACCAGGGAGGCTGAAATGGAGGGTTTGTTCAGTTTGCAGGCGGTGCTGAAGCAGCGAGAGGAGAATCTCAACAACGGTTTGAAGGAGATGCAGGAGGAAATGGAGGCTCTGGAGCAGCAGCTGCAGATGGTGTTGATGAACAGTGATGTTCTCGAAGGTTGGTTGAGGGATAACCAGGGGAAGAAGTTGGGGGGTTCGGAGAATGTTGAGGATGCTTTTGAGTGTGTTGATGTGCTTTCTAAACAGATGCTTGAGTCCACTGCTGCGGATTTGGCTATTGAAGACACACTATATGCTTTGGATAAGGCTGTTCAGGTGGGGTCTCTGCCGTTTGATCAGTACTTGAGGAGTGTGAGGGCACTGTCCAGGGAGCAATTCTTTCACCGCGCCACCGCCGCCAAAGTTAGAGCTGCTCAGTTGCAGGCTCAGGTTGCGAGTATGGCTGCTCGGAATCAACATTATGGTAGCTGA 1191 0.5281 MVQSPNTQVAQFLNSVLSQRGPSAVPYSEDTKWLIRQHLVALTTTFPSLEPKTATFTHNDGRSVNLLQADGTIPMTFQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGFVSVPYLQGWIYPSSNLVELVLSLSHLFARDPPLYSQRRPNPNHSPSPSPNFPSSSSNLSNSSSGYPPPRTYPPSPYASLGAPASSRVHTEDPAEVYKRNAINKLVEMVHHDVAGLRKTREAEMEGLFSLQAVLKQREENLNNGLKEMQEEMEALEQQLQMVLMNSDVLEGWLRDNQGKKLGGSENVEDAFECVDVLSKQMLESTAADLAIEDTLYALDKAVQVGSLPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVASMAARNQHYGS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0474 396 MobiDBLite consensus disorder prediction 172 188 - -
Apr5g0474 396 Gene3D - 318 378 - -
Apr5g0474 396 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 4 391 - -
Apr5g0474 396 SUPERFAMILY Endosomal sorting complex assembly domain 317 377 IPR037202 -
Apr5g0474 396 ProSiteProfiles UEV domain profile. 16 160 IPR008883 GO:0015031|GO:0036211
Apr5g0474 396 Coils Coil 253 287 - -
Apr5g0474 396 Pfam Vps23 core domain 312 374 IPR017916 -
Apr5g0474 396 ProSiteProfiles Steadiness box (SB) domain profile. 317 385 IPR017916 -
Apr5g0474 396 MobiDBLite consensus disorder prediction 157 212 - -
Apr5g0474 396 PANTHER PROTEIN ELC 4 391 - -
Apr5g0474 396 Pfam UEV domain 36 156 IPR008883 GO:0015031|GO:0036211
Apr5g0474 396 SUPERFAMILY UBC-like 18 156 IPR016135 -
Apr5g0474 396 Gene3D Ubiquitin Conjugating Enzyme 3 157 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0474 Apr-Chr5 4790977 4792836 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0474 K12183 - gmx:100778834 595.119