Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0456 ATGATGAAGAACCTCAACATCTCTCTTTGCATGTTTCTTGTAGCTATTGTACGCTTAGGGGGTAGCGTACCCTTTGGCTTTTACTATGGTGATGCCCTTGACAAGAGCTTGATGTTCTTTGAAGCACAAAGGTCTGGTAAATTACCACTTCAACAGCGAGTCAAATGGCGTGGTGATTCTGCTCTCCAAGATGGTTTACTACAAGGAGTAGACCTGGTGGGTGGGTACTATGATGCAGGAGATCATGTGAAGTTTGGGTTGCCAATGGCCTACAGTGTCACTATGCTTGCATGGGGAGCCATTGAGTTCAGTAAGGAAATCACAGAGTCGAACCAAATGGGACACGCGTTATGGGCCATTAAATGGGGTACTGACTACTTCATCAAAGCACACACTCAGCCTAATGTTCTTTGGGGACAGGTGGGTGATGGAGCTTCTGATCATTACTGCTGGGAGCGTGCTGAAGATATGACAACTTCAAGACAAGCCTACAAAATTGATGAAGCACACCCTGGCTCAGATCTAGCAGGTGAAACTGCAGCTGCATTGGCTGCTTCAGCTATAGCTTTCAGGCCCTACAACTCTTCTTACTCTAATCTCTTGCTAGTTCATGCAAAACAGCTCTTCACATTCGCAGATGGGTCCAGAGGTCTCTATGATGACTCCATATCATGTGCTCAGCAATTCTATACTTCTTCCGGTTACTCAGATGAATTGTTGTGGGCTGCAACCTGGCTGCACCTAGCAACTGGTGATGAATACTACCTGAAGTATGTAGTGGACAATGCAGTGTATATGGGTGGAACTGGCTGGGCAGTGAAAGAGTTCTCTTGGGATAACAAATATGCTGGTGTGCAGACCCTCATATCAAAGGTATTACTAGAAGGAAAGGCTGGTTCTTACGCTGCTACACTAAAGCAATACCAAGCCAAGGCAGATTATTTTGCCTGTGCCTGCTTGCAGAAGAATGATGGTTACAATGTGCAGAAAACTCCAGGTGGCTTACTATACGTGCATGAATGGAACAACATGCAGTATGTTTCTTCTGCCGCATTTCTTTCAGTTGTTTACTCTAATTATCTCTCAGCGGCAAAAGCACAGCTCAACTGTCCAGAGGGACAGATTCAACCTCAAGAGCTCCTCAATTTTGCCAAGTCACAGGCTGACTATATCCTTGGTCAAAACCCAGCGGATATGAGCTACTTGGTTGGATATGGAACAAAATATCCTCTTCATGTTCATCATAGAGGTGCTTCCATTGCTTCAATCTTTGCCCTTCAGTATGAGGTTGGCTGTATCCAAGGATTTGAGGCATGGTATAACCGCCCTGAGTCAAATCCTAATGTCATATATGGTGGACTCGTGGGTGGTCCCGATCAAAATGATGACTTCTCTGACGACAGATCGAATTATGAACAAACTGAGCCAACACTTTCAGGTGCTGCTCCTCTTGTAGGCATATTTGCTAAACTTCAGAGTTTATATGGTAATAGCATAGGTGAAGGTTCATACAATGATAAATTATCAGTGCCACAGCCAAAAATACCAAGTACAAACCACTTGAAAATACCAGCATCTACAACATCAGAAGGTGCCCCAGTTGAATTCCTTCACTCAATTAGTAGCTCTTGGACTGTTGGAGACACAACTTATTACCGCCACAAGGTGATAATCAAGAACACTTCTTCAAAGCGAATCTCAGATCTTAAGTTGGTGGTTGAAGATCTCTCAGGCTCTTTATGGGGTCTCTCTCCAACAGAAGAAAAGAACACCTATGAACTTCCCCAATGGAACAAGGTGTTGAACCCTGGCTCGGAGTGTATATTTGTTTATGTTCAAGGCGGACCCCAGGCTAAAGTCTCCATTAAAAGCTTTCATTGA 1881 0.4423 MMKNLNISLCMFLVAIVRLGGSVPFGFYYGDALDKSLMFFEAQRSGKLPLQQRVKWRGDSALQDGLLQGVDLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFSKEITESNQMGHALWAIKWGTDYFIKAHTQPNVLWGQVGDGASDHYCWERAEDMTTSRQAYKIDEAHPGSDLAGETAAALAASAIAFRPYNSSYSNLLLVHAKQLFTFADGSRGLYDDSISCAQQFYTSSGYSDELLWAATWLHLATGDEYYLKYVVDNAVYMGGTGWAVKEFSWDNKYAGVQTLISKVLLEGKAGSYAATLKQYQAKADYFACACLQKNDGYNVQKTPGGLLYVHEWNNMQYVSSAAFLSVVYSNYLSAAKAQLNCPEGQIQPQELLNFAKSQADYILGQNPADMSYLVGYGTKYPLHVHHRGASIASIFALQYEVGCIQGFEAWYNRPESNPNVIYGGLVGGPDQNDDFSDDRSNYEQTEPTLSGAAPLVGIFAKLQSLYGNSIGEGSYNDKLSVPQPKIPSTNHLKIPASTTSEGAPVEFLHSISSSWTVGDTTYYRHKVIIKNTSSKRISDLKLVVEDLSGSLWGLSPTEEKNTYELPQWNKVLNPGSECIFVYVQGGPQAKVSIKSFH* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0456 626 PANTHER ENDOGLUCANASE 5 13 581 - -
Apr5g0456 626 Pfam Carbohydrate binding domain CBM49 535 613 IPR019028 GO:0030246
Apr5g0456 626 Gene3D - 26 503 IPR012341 GO:0005975
Apr5g0456 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 390 416 IPR018221 -
Apr5g0456 626 SMART CBM49_2 534 614 IPR019028 GO:0030246
Apr5g0456 626 SUPERFAMILY Six-hairpin glycosidases 27 498 IPR008928 GO:0005975
Apr5g0456 626 Pfam Glycosyl hydrolase family 9 29 487 IPR001701 GO:0004553|GO:0005975
Apr5g0456 626 PANTHER ENDO-1,4-BETA-GLUCANASE 13 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0456 Apr-Chr5 4569436 4573265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0456 27 626 Glycoside Hydrolase AT1G48930 68.500 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0456 K01179 - gmx:100802420 1093.18