Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0452 ATGTACTTGAGGAGAATACAGTGCAGAGATCGGAGATGGGCCTTAGTGTTGCATCCATCAAAATACTTCTTTAGGCCAAGATTCTTTGATCATCCATGCTTTAAATCTTTGTCCCCTAAGACCACTTTGAAAGATTATTCTTCACATTGCAGTATCATCAGAAAACATCTTTTAGGTTCAGATTCATGTAGGCATACTTCATCTAGAAATAGTTTTACTGGTCTGGACAAAAGGAGTAGTTTATGCCTTAAGTGTACTCAGTTACATGCTTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACACGTACATGTTAACAATGGAGCTAACTTTGATAAGGGACAGAATCAAGAGAAGTTAGGAAAAGATGTCAAGTACTGCAACACCCATGCACGACTTGGAGAACAGGAACAAGAGGAATGGCTTAATAATGAAAAGCTTGCTATAGAAAGTAAAAGGAGAGAATCACCATTTTTGACCAGAAGGGATAAGTTTAAAAATGAGTTTATGAGAAGAATTATTCCTTGGGAGAAACTAAACATTTCCTGGGACACATTTCCTTATCACATTCATGAGCATACCAAAAATCTTCTTGTGGAATGTGCTGTTTCTTATTTGAGACATAATAAATTTGCTTCAGCTTTTGGCACTCGCCTCACATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCCGGGACTGAGCTGTATCGTGAGAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTTTGTTGGTGCTTGATAGCAGCATCCTTGCTCCTTATGATATTGATGATGATTTATCATCGGACTATGAATCTGATGGTGATAATGCAGAATCTGGGGAGGAGGGTTCTCTGGAGTCTGAAAATGAGGATGATCATGATGCTAGTAATGAAGAAGAGTGGACTAGCAGTACTGAGGCAAAGTCAGATGCAAGTGATAATGAAGATGCAGTAGCATCTGCTGAAGCACACCTTAAGAATGTTAAAGCGGCTGTTCTTCGGAAACTTGTCCCTTACAATGTTGAAGAATTTGAAAAGATAGTGTCCGGAGAATCTGAGAGTTCTGAGCCAACCACGTCTAATGATGTCAATTCTACTGACAAATCTGGATGCCAGCTAAGAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTCGTGTTACAGCTGATGATAGGCCTTTAACTAATGGTCAGAAAGGAGAAGTATATGAGGTGAATGGAGATCAGGTTGCTGTTATCTTGGATATTAATGAAGATAGGGTCAATGACGGTGAAGTGGAGAACCTTAGTGCTGATCGTACAAAATCCCCAATTTATTGGATAGATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACATGATTGCTACATAGCAGTAGAGGCTTTATGTGAGGTTTTGCATTGCAAACAACCTCTTATTGTCTATTTTCCAGACAGTTCACAGTGGTTACATAAATCAGTTCCAAAATCCAACCGAAATGAGTTTTTTCGCAAGGTTGAGGAGATGTTTGACAAGTTATCTGGCCCCATAGTGTTGATTTGTGGGCAAAACAAAGTCCAGTCAGGATCAAAGGAAAAAGAACAATTTACAATGATACTTCCAAACTTTGGCCGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCGGTTGACTGAGGGATTTAAAGGGGAAAAGACATCAGAAGATGATGAAATTAACAAGCTCTTCTCTAATGCTGTGTGTATACATCCACCTAAGGATGAGAATCTGCTTGCAACATTCAAGAAACAGCTTGAGGAAGATAGGAAAATTGTGACTTCACGCAGTAATTTGAATGTATTACGGAAGGTGCTCGAAGAACATCAGCTGTCATGCATGGACCTTTTGCATGTAAATACTGATGGGATCATTTTGACAAAGCAAAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATTACTTGTCGTCATGCCTCCTTCCTTCTGTTAAAGGAGAAAGATTGTGCTTACCTCGCGAAAGTCTTGAAATTGCAATCTCAAGATTGAAGAACCAGGAAACTATGTCACGGAAGCCTTCTCAGAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTGAAGAAGGCACTTAATGAACTCGTTATTCTTCCAATGAGGAGGCCAGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGTAAGGGAATACTACTTTTTGGTCCTCCTGGAACTGGGAAAACCCTTATGGCCAAGGCACTTGCAACTGAAGCTGGGGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATTTTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGCGGTGCTTCTGAACATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAACCAAAGAATCCTTATTCTTGGTGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGTGATTTGAAGAACCTATGTATTGCTGCAGCATATAGACCTGTTCAAGAACTCTTAGAGGAAGAAAAGAAGGAACACAATGATAGTACAACTTCTGTGCTAAGGCCTCTTAATTTGGATGATTTTATTCAGTCAAAATCCAAGGTGGGTCCATCAGTTGCCTACGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTACGGAGAAGGTGGTAGTAGGACTAAATCACCATTTGGATTTGGGAGCTGA 2922 0.4062 MYLRRIQCRDRRWALVLHPSKYFFRPRFFDHPCFKSLSPKTTLKDYSSHCSIIRKHLLGSDSCRHTSSRNSFTGLDKRSSLCLKCTQLHAYSSESDGRNASEDKHVHVNNGANFDKGQNQEKLGKDVKYCNTHARLGEQEQEEWLNNEKLAIESKRRESPFLTRRDKFKNEFMRRIIPWEKLNISWDTFPYHIHEHTKNLLVECAVSYLRHNKFASAFGTRLTSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSSILAPYDIDDDLSSDYESDGDNAESGEEGSLESENEDDHDASNEEEWTSSTEAKSDASDNEDAVASAEAHLKNVKAAVLRKLVPYNVEEFEKIVSGESESSEPTTSNDVNSTDKSGCQLRKGDRVKYIGPSVRVTADDRPLTNGQKGEVYEVNGDQVAVILDINEDRVNDGEVENLSADRTKSPIYWIDVKDIENDLDAQSHDCYIAVEALCEVLHCKQPLIVYFPDSSQWLHKSVPKSNRNEFFRKVEEMFDKLSGPIVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRLTEGFKGEKTSEDDEINKLFSNAVCIHPPKDENLLATFKKQLEEDRKIVTSRSNLNVLRKVLEEHQLSCMDLLHVNTDGIILTKQKAEKVVGWAKNHYLSSCLLPSVKGERLCLPRESLEIAISRLKNQETMSRKPSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLMAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGASEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRSDLKNLCIAAAYRPVQELLEEEKKEHNDSTTSVLRPLNLDDFIQSKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGS* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0452 973 MobiDBLite consensus disorder prediction 274 325 - -
Apr5g0452 973 SMART AAA_5 759 899 IPR003593 -
Apr5g0452 973 MobiDBLite consensus disorder prediction 358 377 - -
Apr5g0452 973 ProSitePatterns AAA-protein family signature. 866 885 IPR003960 GO:0005524|GO:0016887
Apr5g0452 973 MobiDBLite consensus disorder prediction 305 325 - -
Apr5g0452 973 Pfam ATPase family associated with various cellular activities (AAA) 763 888 IPR003959 GO:0005524|GO:0016887
Apr5g0452 973 MobiDBLite consensus disorder prediction 274 304 - -
Apr5g0452 973 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 396 888 - -
Apr5g0452 973 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 53 394 - -
Apr5g0452 973 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 889 971 - -
Apr5g0452 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 721 895 IPR027417 -
Apr5g0452 973 Gene3D - 887 960 - -
Apr5g0452 973 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 53 394 - -
Apr5g0452 973 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 396 888 - -
Apr5g0452 973 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 889 971 - -
Apr5g0452 973 Gene3D - 722 886 IPR027417 -
Apr5g0452 973 CDD AAA 761 888 - -
Apr5g0452 973 MobiDBLite consensus disorder prediction 355 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0452 Apr-Chr5 4481698 4500073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0452 757 890 Calmodulin-binding Proteins AT3G56690 37.313 8.51e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0452 - - gmx:100812718 1715.28