Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0447 ATGAAAAGAGGATTCGGTGTTAGAGCTTTGCTCATTTCTCTCCGTAACTATAACCCTCTGTTGGCGCCGCCACTCTCACTAACTAACCCCTTTTGCGGCGTTAGATCTCTTCATTCTCCACCTTCCTCCGCCGTCGCCGCCATGCCTGGGGCAGAGACTCTCGATTTGGAGTGGCCGGCGAAGCGCATCAGGGACACTTTCATCAACTTCTTCCAAGACAAGAATCACGTCAACTGGAAGTCTAGCCCTGTCGTTCCCTTCAATGACCCTACACTTCTCTTTGCCAACGCTGGCATGAATCAGTACAAGCCAATTTTTTTGGGAACTGCAGACCCTAACACTGCATTGAGCAAACTCTCTCGTGCTTGCAATACGCAAAAGTGCATTCGAGCTGGTGGTAAACACAATGATCTTGATGATGTGGGAAAGGATACTTACCATCACACCTTCTTTGAGATGTTGGGCAATTGGTCCTTTGGGGATTACTTTAAAGAAGAAGCCATCAGCTGGGCGTGGGAGCTTCTAACCAAAGTTTACAAATTACCGACAGATCGCATTTATGCCACATATTTTGGTGGTGATGATAAGTCTGGTCTTGCCCCTGATTTTGAAGCTAGAGATATATGGCTAAAGTTCTTGCCTCCTGGACGCGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTTAATAACGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAAGCTGATGGCTCTCTTAAACCTCTGCCAGCAAAGCATGTTGATACAGGCTTGGGTTTTGAACGTTTGACCTCTATACTACAGAACAAAATGAGCAATTATGATACTGATGTCTTCTTGCCTATCTTTGATGATATTCAGCGGGCAACTGGTGCCCAGCCATATTCTGGTAAAGTTGGGTCAGATGATGTAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTGTCATTTGCCATTGCTGATGGGTCTCGTCCTGGTAACGAGGGCCGTGAGTATGTTCTGAGGCGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTGAAAGCTAAAGAGGGGTTTTTCAATGGGCTTGTAAGTGTTGTGGTGAATGTGATGGGCGATGTTTTCCCTGAGCTAAAACAACAGGAAGTGCACATTCGGAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGCATTGAGAAATTTGAGACAGCTGTTCGACATGTTCAGGGAAAGATACTGAGTGGGGAGGAAGCATTTATCTTGTGGGATACATATGGGTTCCCGTTAGATCTCACTCAGCTGATGGCTGAAGAAAAGGGCTTAGTTGTTGATGTCAAAGGTTTCAATAGTGCTATGGAAGCTGCAAGAGAGAGATCTAGAAATGCTCAAACAAAGGTATCTTATTTGTTTGAATGTCTCTTTTTGTGCTTAAATTTCTTCTGTGTTTTGAAGACCCCCAATATATTTAGAGGATTAACAAGACTGACTAATATTAACATTCATTTGTTCTGTATTTTCCCTGTTTCTCTTCCATCTTTCCTTTGTTATTGTCAGCAAGCTGGCGGTGCCATTGTCATGGATGCTGATGCTACCTCAGCATTGCACAAAAGGGGTGTTGCCCCAACTGATGATAGCTTCAAATATGTTTGGTTCAAGGACCATGAGAGTGTGGTAAAAGCAATATATACTGGATCTGAATATGTTGACTCTGTTAATACTGATGGTGATATTGGCATAGTTCTGGAATCTACAAGCTTCTATGCCGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGGGTCCACATTCTTCATTTCATGTTCGTAATGTTCAAGTTTATGGAGGTTTTGTTCTTCACATTGGTAATGGGACTGATGTCTCTGTCGGAGACAAAATAGTATGCAAGGTTGATTATGGAAGACGTGCCCTTATAGCTCCTAACCATACCTGCACACACATGTTGAATTTTGCTCTTAGGGAAGTACTTGGCGATCATGTTGACCAGAAAGGGTCCATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTGACAATTTGAGGAGAATTGAATCAATTGTTAATGATCAAATAAAAGCTGAATTGGATGTAAGTGCAAAGGAGGCAACTCTTGCTGAAGCCAAGAGTATCAATGGTTTGCGAGCTGTTTTTGGAGAAGTCTATCCTGATCCCGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTCCTTGCCGACCCTGGGAATGAAAAATGGTTATCTATTTCATCAGAATTATGTGGAGGTACCCATATTTCAAACACGCGAGAGGCAAAAGCTTTTGCACTTCTATCTGAGGAGGGTATTGCAAAAGGTATCCGTAGAATAACAGCTGTCACAACTGATCGTGCTTATGATGCAATGAAAGTGGCCGATGAATTTGAGCAGCAAGTAGATGATGCAGCTAAGTTAGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATCACTGAAAAGCAACGTGGAAACTTTATCAATTCCTGCAGCCAAGAAAGCTGAAATCAAGACCAAGATAGCCCGGCTTCAGGATCAAGTGAGAAAAGCACAAAAACAGGTTGCTGAAGAAAACAAACGTAAAGCTGTAACAATCACAGCTGAGAAGGCTGAACTTGCTGCTTCAAATGGAAAAACTTTTTGTATATCTCATGTTGATGTTGGTCTGGATGTGGCTGCAGTTCGTGAGGCTGTTACAAAAGTCATGGACCAGAAGGGCTTATCTGTGATGGTTTTTAGCACTGATGGATCTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCAGAGAAAGGAGATAAAGGTAAGCTGGACGTGTCAGAGTGGCTGAGTAATGCTTTGGGTCCGCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCAACAGGACAGGGTACAGATGCATCACATGTAAATGAGGCTATGGATCTTGCAGAAAAATTTGCGTCGATGAAATTGTGTTAA 3153 0.4294 MKRGFGVRALLISLRNYNPLLAPPLSLTNPFCGVRSLHSPPSSAVAAMPGAETLDLEWPAKRIRDTFINFFQDKNHVNWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTKVYKLPTDRIYATYFGGDDKSGLAPDFEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFLPIFDDIQRATGAQPYSGKVGSDDVDKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVSVVVNVMGDVFPELKQQEVHIRNVIEEEEESFGRTLIKGIEKFETAVRHVQGKILSGEEAFILWDTYGFPLDLTQLMAEEKGLVVDVKGFNSAMEAARERSRNAQTKVSYLFECLFLCLNFFCVLKTPNIFRGLTRLTNINIHLFCIFPVSLPSFLCYCQQAGGAIVMDADATSALHKRGVAPTDDSFKYVWFKDHESVVKAIYTGSEYVDSVNTDGDIGIVLESTSFYAEQGGQIFDTGSLEGPHSSFHVRNVQVYGGFVLHIGNGTDVSVGDKIVCKVDYGRRALIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNDQIKAELDVSAKEATLAEAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNEKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKVADEFEQQVDDAAKLEGSLLEEKVSSLKSNVETLSIPAAKKAEIKTKIARLQDQVRKAQKQVAEENKRKAVTITAEKAELAASNGKTFCISHVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDGSTNKAVVCAGVPEKGDKGKLDVSEWLSNALGPLKGRCGKGKGGLATGQGTDASHVNEAMDLAEKFASMKLC* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0447 1050 Gene3D - 589 682 - -
Apr5g0447 1050 PANTHER ALANYL-TRNA SYNTHETASE 26 510 - -
Apr5g0447 1050 PANTHER ALANYL-TRNA SYNTHETASE 561 1049 - -
Apr5g0447 1050 Gene3D - 936 1045 - -
Apr5g0447 1050 Pfam DHHA1 domain 905 1044 IPR003156 GO:0003676
Apr5g0447 1050 SUPERFAMILY ThrRS/AlaRS common domain 682 859 IPR018163 GO:0000166
Apr5g0447 1050 Hamap Alanine--tRNA ligase [alaS]. 58 1049 IPR023033 GO:0004813
Apr5g0447 1050 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 784 842 IPR012947 GO:0004812|GO:0005524|GO:0043039
Apr5g0447 1050 SMART tRNA_SAD_4 784 843 IPR012947 GO:0004812|GO:0005524|GO:0043039
Apr5g0447 1050 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 58 856 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Apr5g0447 1050 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 311 511 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Apr5g0447 1050 SUPERFAMILY Translation proteins 612 682 IPR009000 -
Apr5g0447 1050 TIGRFAM alaS: alanine--tRNA ligase 63 511 IPR002318 GO:0000166|GO:0005737
Apr5g0447 1050 CDD AlaRS_core 60 306 - -
Apr5g0447 1050 PANTHER BNACNNG61840D PROTEIN 561 1049 - -
Apr5g0447 1050 PANTHER BNACNNG61840D PROTEIN 26 510 - -
Apr5g0447 1050 PRINTS Alanyl-tRNA synthetase signature 136 147 IPR002318 GO:0000166|GO:0005737
Apr5g0447 1050 PRINTS Alanyl-tRNA synthetase signature 264 275 IPR002318 GO:0000166|GO:0005737
Apr5g0447 1050 PRINTS Alanyl-tRNA synthetase signature 291 304 IPR002318 GO:0000166|GO:0005737
Apr5g0447 1050 PRINTS Alanyl-tRNA synthetase signature 348 364 IPR002318 GO:0000166|GO:0005737
Apr5g0447 1050 PRINTS Alanyl-tRNA synthetase signature 372 385 IPR002318 GO:0000166|GO:0005737
Apr5g0447 1050 Pfam tRNA synthetases class II (A) 63 510 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Apr5g0447 1050 Pfam tRNA synthetases class II (A) 567 684 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Apr5g0447 1050 Coils Coil 896 923 - -
Apr5g0447 1050 SUPERFAMILY Class II aaRS and biotin synthetases 60 310 IPR045864 -
Apr5g0447 1050 Gene3D - 683 859 - -
Apr5g0447 1050 Gene3D Bira Bifunctional Protein; Domain 2 59 307 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0447 Apr-Chr5 4396644 4408692 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0447 K01872 - gmx:100788271 1778.84