Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g0441 | ATGGCTTCACCTGCATGGTTGCCGCAGGAGACACAGCCATCTGTGTCTGGAGAAACGCCTCTTCCTTTGGCCTCTTCCACTCCTTCAGCTCCTGCTGCTGCAACTAATTGCTGTGCTTTTGTAGCGGCGCCGTTCTCTTACGCTGTGCATCAAAATGTCAATACTTCTGGGAATTCTCAGCAGTCATCAACACATCCTGTGATGAAGTCCAATTCGGCAGCGAATCCCATGGTGGTTCAACATTCAGTTCCTGGTCTCTCTTCACATGTTGCTCCTCCTTCATTTTCATATAATATTAACCAAAGTGGTGCCAGTTTTCCCGGCAACCAGCAGCATGCACAATCTAGCACTAACATTTCAGATTCCGTTGCACAGGATGTTAGTAAATTGTCATCTGCGTCAAGTATCCCACATTCTACCCCTGCTCATACTTCCTCATCCATAATGCCTCGACCCTCTGACTCTAATTATCGCCCAGCTACATCGTGGATGCCAACAGCTCCATCTTTTCCTGTGCATCCTGTAGTGCCTACTCCTGGGAACCCCGGCCCTCCTGGATTAGCATCAACTGTGACAATATCCTCAAATTCTGCTGCTCTGCCCACAGGCACAGATTCTTCCTCAGCTGCAGTATTGAGACCAAGTATGCCAAGTGCAGCCATTGCACCAGATCCTAGTGCTCCTCAGAAAGGCTTACCGTATCCATCAATGCCTGCCATGGCTGCTTCCCCTCAGGGGCTTTGGTTACAGCCCCCACAGATGAGTGGTGTACTTAGGCCACCATTTCTTCAATATCCTGCCCCATTTCCTGGTCCCTTTCCATTTCCAGCTCGCGGTGTTACTCTCCCCGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGGGTGCTGGTGGTGGCATGTCTGTGCCTTCTGCAGCTGCTGGTCATCAGTTGAGGGGAACAACTGCTTTGCCAACAGAAGTAATTTCAGGGCCTACTGATGATCGGAACAAATTAAATGCCGTTGTCACACATAATGAGAATGTTGCTAATAACGATCACTTAGATGCCTGGACAGCCCATAAGACTGATGCAGGAATTGTATACTATTATAATGCTGTGACAGGAGAATCAACTTATGATAAACCTGTTGGCTTTAAAGGGGAGCCTCACCAAGTTTCTGTTCAGCCAACTCCAGTTTCAATGGTGGATTTGCCTGGTACTGATTGGCTGTTGGTCTCTACTAGTGATGGAAAAAAATATTACTACAACAATCGAACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGGTTGAATTGAAAAAGAAGCAGGATGGTGATGTTATAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAATCTACAGAGCTCATCATCGGCACTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTGCTTCCTCTTCTATTCCTGTGCCATCAGTACAAACAGGATCTGAATCAAATGGTTCAAAAGCAGCTGAATCTACAGCTAAAGGCCTTCAAGTTGATAATAACAAAGATAAACTGAAAGATGCTAATGGTGATGCTAATGTCTCAGATACATCCTCAGATTCTGAAGATGAAGATAGTGGACCTTCAAAGGAGGAGCGCATCATTCAATTTAAGGATATGCTTAAGGAGCGAGGAGTTGCACCATTCTCCAAATGGGAGAAAGAACTGCCAAAGATTGTATTTGATCCACGTTTCAAGGCCATCCCAAGTTATTCTGCTAGAAGATCCTTGTTTGAGCATTATGTTAAAACCCGTGCAGAAGAAGAACGCAAAGAAAAACGTGCTGCACAAAAAGCTGCAGTTGAAGGATTTAAGCAGTTACTGGATGAAGCCTCAGAGGATATTGGCCACAATACTGATTATCAAACTCTGCGAAAGAAATGGGGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAACGAGAACACCTATTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGGCTCAAGCAATGCGTGCAGTTGCTGCTGCCAGTTTTAAGTCAATGCTTAAAGACCGAGGAGATATATCTTTTAACTCTCGTTGGTCCAGGGTTAAAGAAAATTTAAGGGATGATCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAACTTTATTCAATGAGTATATATCTGAATTGAAGGCTGCTGAACATGCTGCAGAACGAGAGACCAAAGCTAAAAGGGAGGAGCAGGAGAAGCTAAGGGAAAGAGAACGGGAGCTGCGCAAAAGAAAGGAAAGAGAAGAACAAGAAATGGAAAGGGTGCGAATAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGATTCTCTGGCATCATGGACAGAATCTAAGCCTAGATTGGAGAAGGATCCTCAAGGGCGTGCTACTAATCCCGATCTTGATCCATCTGACACGGAAAAGCTCTTTAGGGAACATGTAAAGATGCTTCAGGAACGTTGTGCACACGAGTTTAGAACTCTCTTAGCTGAAGTCTTCACCTCCGATGCTGCATCTCAAGAAACTGACGACGGAAAAACAGTTCTTAATTCTTGGTCTACAGCTAAACGTCTTTTGAAATCTGATCCAAGATATAACAAGGTTCCAAGAAAAGAAAGAGAAGGATTGTGGCGGCGGTATGCAGAGGATATGCTGCGGCGGCAAAAAGCATCTCATGATTCTAGGGAAGAGAAACATACAGATGCTAAGGGTAGAAGTTTAGAATCTTCCAAACTTCCCATGGAATCTGGAAGATCGCATGAGAGAAGATGA | 2931 | 0.4449 | MASPAWLPQETQPSVSGETPLPLASSTPSAPAAATNCCAFVAAPFSYAVHQNVNTSGNSQQSSTHPVMKSNSAANPMVVQHSVPGLSSHVAPPSFSYNINQSGASFPGNQQHAQSSTNISDSVAQDVSKLSSASSIPHSTPAHTSSSIMPRPSDSNYRPATSWMPTAPSFPVHPVVPTPGNPGPPGLASTVTISSNSAALPTGTDSSSAAVLRPSMPSAAIAPDPSAPQKGLPYPSMPAMAASPQGLWLQPPQMSGVLRPPFLQYPAPFPGPFPFPARGVTLPAVPIPDSQPPGVTPVGAGGGMSVPSAAAGHQLRGTTALPTEVISGPTDDRNKLNAVVTHNENVANNDHLDAWTAHKTDAGIVYYYNAVTGESTYDKPVGFKGEPHQVSVQPTPVSMVDLPGTDWLLVSTSDGKKYYYNNRTKTSCWQIPNEVVELKKKQDGDVIKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQSSSSALDLIKKKLQDSGTPVASSSIPVPSVQTGSESNGSKAAESTAKGLQVDNNKDKLKDANGDANVSDTSSDSEDEDSGPSKEERIIQFKDMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAVEGFKQLLDEASEDIGHNTDYQTLRKKWGNDPRFEALDRKEREHLLNERVLPLKKAAEEKAQAMRAVAAASFKSMLKDRGDISFNSRWSRVKENLRDDPRYKSVRHEDRETLFNEYISELKAAEHAAERETKAKREEQEKLRERERELRKRKEREEQEMERVRIKIRRKEAVTSFQALLVETIKDSLASWTESKPRLEKDPQGRATNPDLDPSDTEKLFREHVKMLQERCAHEFRTLLAEVFTSDAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREGLWRRYAEDMLRRQKASHDSREEKHTDAKGRSLESSKLPMESGRSHERR* | 977 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g0441 | 976 | SUPERFAMILY | FF domain | 569 | 634 | IPR036517 | - | |
| Apr5g0441 | 976 | Pfam | FF domain | 580 | 625 | IPR002713 | - | |
| Apr5g0441 | 976 | Pfam | FF domain | 714 | 760 | IPR002713 | - | |
| Apr5g0441 | 976 | Pfam | FF domain | 644 | 692 | IPR002713 | - | |
| Apr5g0441 | 976 | SMART | ww_5 | 350 | 382 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | SMART | ww_5 | 402 | 434 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | Coils | Coil | 761 | 816 | - | - | |
| Apr5g0441 | 976 | SUPERFAMILY | FF domain | 868 | 942 | IPR036517 | - | |
| Apr5g0441 | 976 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Apr5g0441 | 976 | Pfam | WW domain | 354 | 380 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | MobiDBLite | consensus disorder prediction | 836 | 858 | - | - | |
| Apr5g0441 | 976 | MobiDBLite | consensus disorder prediction | 771 | 800 | - | - | |
| Apr5g0441 | 976 | Gene3D | FF domain | 870 | 936 | IPR036517 | - | |
| Apr5g0441 | 976 | Gene3D | FF domain | 809 | 869 | IPR036517 | - | |
| Apr5g0441 | 976 | MobiDBLite | consensus disorder prediction | 507 | 540 | - | - | |
| Apr5g0441 | 976 | ProSiteProfiles | FF domain profile. | 709 | 763 | IPR002713 | - | |
| Apr5g0441 | 976 | SUPERFAMILY | WW domain | 406 | 438 | IPR036020 | GO:0005515 | |
| Apr5g0441 | 976 | ProSitePatterns | WW/rsp5/WWP domain signature. | 355 | 380 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 111 | 970 | - | - | |
| Apr5g0441 | 976 | SMART | FF_2 | 709 | 763 | IPR002713 | - | |
| Apr5g0441 | 976 | SMART | FF_2 | 574 | 628 | IPR002713 | - | |
| Apr5g0441 | 976 | SMART | FF_2 | 812 | 869 | IPR002713 | - | |
| Apr5g0441 | 976 | SMART | FF_2 | 641 | 696 | IPR002713 | - | |
| Apr5g0441 | 976 | MobiDBLite | consensus disorder prediction | 507 | 575 | - | - | |
| Apr5g0441 | 976 | MobiDBLite | consensus disorder prediction | 939 | 976 | - | - | |
| Apr5g0441 | 976 | MobiDBLite | consensus disorder prediction | 101 | 162 | - | - | |
| Apr5g0441 | 976 | ProSiteProfiles | FF domain profile. | 641 | 696 | IPR002713 | - | |
| Apr5g0441 | 976 | ProSiteProfiles | FF domain profile. | 574 | 628 | IPR002713 | - | |
| Apr5g0441 | 976 | SUPERFAMILY | WW domain | 354 | 384 | IPR036020 | GO:0005515 | |
| Apr5g0441 | 976 | CDD | WW | 405 | 434 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | SUPERFAMILY | FF domain | 805 | 874 | IPR036517 | - | |
| Apr5g0441 | 976 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 407 | 434 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | ProSitePatterns | WW/rsp5/WWP domain signature. | 407 | 432 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | SUPERFAMILY | FF domain | 705 | 767 | IPR036517 | - | |
| Apr5g0441 | 976 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 111 | 970 | IPR045148 | GO:0003712|GO:0070063 | |
| Apr5g0441 | 976 | Gene3D | FF domain | 560 | 635 | IPR036517 | - | |
| Apr5g0441 | 976 | Gene3D | FF domain | 700 | 777 | IPR036517 | - | |
| Apr5g0441 | 976 | Gene3D | FF domain | 636 | 699 | IPR036517 | - | |
| Apr5g0441 | 976 | CDD | WW | 355 | 382 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | Gene3D | - | 351 | 392 | - | - | |
| Apr5g0441 | 976 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 355 | 382 | IPR001202 | GO:0005515 | |
| Apr5g0441 | 976 | SUPERFAMILY | FF domain | 633 | 702 | IPR036517 | - | |
| Apr5g0441 | 976 | Gene3D | - | 393 | 447 | - | - | |
| Apr5g0441 | 976 | ProSiteProfiles | FF domain profile. | 812 | 869 | IPR002713 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g0441 | K12824 | - | gmx:100815386 | 1509.2 |