Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0434 ATGGCAAGCCATCCTGGAAAATATGCTCCTTCAAATGGCTCTGTCTATGTGTGCAACTTGCCCTTTGGGACTGACGAAAATATGTTGGCTGAATTTTTTGGCACCATTGGATTAGTAAAGAAAGATAAGCGGACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAATAAAGATTTTCATGGTAATATAATTGGAGTTTATATAGCAGAGTCAAAAAACAAGGATGACCAAACATATAATTCAGCAGTAGAGCCAGATGTTGCTGGTAATGTTAGCGGGCTAGAGGGAACTACCAGGGATGTTAATGGCGGTAATGGAAGAGGTAGAGGTCAAAATGATACTGCAGGCAAAGCATGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGCGCGTGTAATCGTTGTGGAACTGCTCGTCCTGCTGGTGCTGCTGGTATTGCAGGAGCTGGTGGTCGTGGTAAGGGACGTGCTGTACAAGATTCAGGGGCTGCTGGCCGCCCAGTTGGTGGAGGACTCTTTGGCCCCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAAACGTCGTAGGAGGGAAGCTGAAGATGATGGAGAGTTGTATGATGAATTTGGAAATCTAAAGAAGAAGTTCCGTGCCAAAACCCAGCAAGCTGAAGCTGCTCGAGGGCTTCCTGGTTCAGGGCGTGCTGGCTGGGAGGTTGAGGAACTAGGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAACGTAATGATGGGGAGAACAGGAACAGAGAGCGAAACGATAAAGATAGGCAAAGCAGTCGGAATAGAGAGAGGGACAGGGGAAGAGATCGAGACTGGGATTATGTTGATCGAGATAGAGATTATGGGCGGGATCGTGACCGGAGTAGACACCGTTATTAA 1155 0.4623 MASHPGKYAPSNGSVYVCNLPFGTDENMLAEFFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNIIGVYIAESKNKDDQTYNSAVEPDVAGNVSGLEGTTRDVNGGNGRGRGQNDTAGKAWQQEGDWLCPNTSCSNVNFAFRGACNRCGTARPAGAAGIAGAGGRGKGRAVQDSGAAGRPVGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEELGIDRDARESRDRGRERNDGENRNRERNDKDRQSSRNRERDRGRDRDWDYVDRDRDYGRDRDRSRHRY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0434 384 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Apr5g0434 384 MobiDBLite consensus disorder prediction 123 143 - -
Apr5g0434 384 MobiDBLite consensus disorder prediction 238 277 - -
Apr5g0434 384 CDD RRM_SARFH 15 97 - -
Apr5g0434 384 MobiDBLite consensus disorder prediction 314 384 - -
Apr5g0434 384 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Apr5g0434 384 SMART rrm1_1 14 95 IPR000504 GO:0003723
Apr5g0434 384 Gene3D - 146 182 - -
Apr5g0434 384 Gene3D - 212 243 - -
Apr5g0434 384 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 384 - -
Apr5g0434 384 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Apr5g0434 384 SUPERFAMILY Ran binding protein zinc finger-like 209 243 IPR036443 -
Apr5g0434 384 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Apr5g0434 384 Gene3D - 12 95 IPR012677 -
Apr5g0434 384 MobiDBLite consensus disorder prediction 254 277 - -
Apr5g0434 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Apr5g0434 384 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Apr5g0434 384 SUPERFAMILY Ran binding protein zinc finger-like 144 181 IPR036443 -
Apr5g0434 384 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 384 - -
Apr5g0434 384 Coils Coil 257 277 - -
Apr5g0434 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 90 IPR000504 GO:0003723
Apr5g0434 384 MobiDBLite consensus disorder prediction 292 384 - -
Apr5g0434 384 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Apr5g0434 384 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Apr5g0434 384 MobiDBLite consensus disorder prediction 114 143 - -
Apr5g0434 384 SMART zf_4 215 239 IPR001876 -
Apr5g0434 384 SMART zf_4 151 177 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0434 Apr-Chr5 4257000 4263190 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0434 - - gmx:100780819 556.214