Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0414 ATGCCAATGCCATCTCCATCGTTCCCAACCCTCAAACGCTTCAAATACTCCAACCTTTGCATCGCAAAGCCCCTTCTCTCTAACTCTTCCCTTTCCGAAACCGTTTCTTCTCTCGACCTTTTCCGCCTCAAGGGCATTCGCTTACCCTCTCGCGTTCTCGCCACCCTCCTGCGTCAGTGTTCCAAAACCAGGTCTTATCGAGAGGGAAAGTTGGTTCACCTCCATTTGAAGCTCACAGGTTTCAAACGCCCTCCACCGCTTTTAGCTAACCATTTGATATGCATGTACTTCAGCTGCGGCGATTTCGTTCAGGCACGCAAGGTGTTCGACAAAATGGAGGTGAGAAATTTGTACACTTGGAACAATATGCTTTCTGGATATGCTAAATTGGGCATGATGAAGCAAGCTAGGAGCTTCTTCTATCGAATGCCTCAAAGGGATTATGTGTCTTGGAATACGATGGTGACTGGGTATGCACACAGTGGCAGATTTGGTGAGGCTTTGAGATTTTATGGACGGTTTAGGAGATTGTCTATTGGGTATAATGAGTTTAGCTTTGCCGGTGTATTGATTGTTTGTGTAAAATTGAAAGAGCTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTAGTTATCGGGTTTTTATCCAATGTGGTTATATGCAGCTCAATTGTTGATGCTTATGGCAAGTGTGGGAAGATGGATGATGCTAAGAGATTATTTGATGACATGACCGTGAGGGATATTCCTGCATGGATGACATTATTTTCGGGTTATGCTGCATGGGGGAACATGGAATCAGCTGCTGAATTGTTTATTCAGATGCCTAAGGAGAATTCTTGTTCGTGGACATCATTGATCAGTGGTTATGCTAGAAATGGTCAGGGTCATGAAGCACTTGGAGTGTTTAGAAAGATGATCAGGCATCAAGTTAGACCTGATCAATGTACATTCAGTAATTGCCTCTTTGCTTGTGCCACTATTGCTTCACTGAAGCATGGGAAACAAATACATGCGTTTTTGGTGCGAAATAACATCAAACTTAATACTACTCTCATTAGTGCAATTGTTGACATGTATGCAAAATGTGGAAGCATAGAAACTGCCAGGCGAGTTTTTAATTTCATTGGAAATAAGCAAGATGTAGAGTTGTGGAACATGATGATATCAGCTCTGGGTCACTATGGCTATGGTATAGAAGCAGCTATGATGCTAAATGATATGCTAAGATCAGGAGTGAAGCCAAATAGGGCTACTTTTGTTGTCATTCTTAATGCTTATTGTCATTCAGGTCTTGTTCAGGAAGGGCTTCAGTTTTTCACGTCCATGACTTGTGAGCATGATGTTGTCCCTGACCAAGGACACTATGCATGCTTAATTGATCTTTTGGATCGAGCTTGGTATTTTAAAGAATCAGTGAAGGATCTGCAAATGATAGATTGTAATCCAGGGAACCATGTTTGGAATTCTTCAATTGGTGTATGTAGAATGCATGGAAATACATATTATGGAAGAGAAGTAGCTGCATTCCTTATTAAATTGCAGCCGCTCTCCTCTGCTGCCTACACATTACATTCAAGTATATATGCTGCACTTGGGAAAGGGAAACTGGTTGAGAAAACCAGACATATTTTGGATGAGAAATGTGTGAGGAAAGATCAGGCCATTAGTTGGATTGAAATTGATAATAAAGTTCATACTTTCACCGTATTAGATGGGTCACACCCTCTGAAGGAAACAATATACTCATCTTTGGGGCACTTGAGTAACCACATGGAGGACCATGCCCCATTACTTAGCTTCCAAATGTGA 1812 0.4183 MPMPSPSFPTLKRFKYSNLCIAKPLLSNSSLSETVSSLDLFRLKGIRLPSRVLATLLRQCSKTRSYREGKLVHLHLKLTGFKRPPPLLANHLICMYFSCGDFVQARKVFDKMEVRNLYTWNNMLSGYAKLGMMKQARSFFYRMPQRDYVSWNTMVTGYAHSGRFGEALRFYGRFRRLSIGYNEFSFAGVLIVCVKLKELELCRQIHGQVLVIGFLSNVVICSSIVDAYGKCGKMDDAKRLFDDMTVRDIPAWMTLFSGYAAWGNMESAAELFIQMPKENSCSWTSLISGYARNGQGHEALGVFRKMIRHQVRPDQCTFSNCLFACATIASLKHGKQIHAFLVRNNIKLNTTLISAIVDMYAKCGSIETARRVFNFIGNKQDVELWNMMISALGHYGYGIEAAMMLNDMLRSGVKPNRATFVVILNAYCHSGLVQEGLQFFTSMTCEHDVVPDQGHYACLIDLLDRAWYFKESVKDLQMIDCNPGNHVWNSSIGVCRMHGNTYYGREVAAFLIKLQPLSSAAYTLHSSIYAALGKGKLVEKTRHILDEKCVRKDQAISWIEIDNKVHTFTVLDGSHPLKETIYSSLGHLSNHMEDHAPLLSFQM* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0414 603 Pfam PPR repeat 90 116 IPR002885 -
Apr5g0414 603 Pfam PPR repeat 118 146 IPR002885 -
Apr5g0414 603 Pfam PPR repeat 219 248 IPR002885 -
Apr5g0414 603 Pfam PPR repeat 149 177 IPR002885 -
Apr5g0414 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 451 IPR002885 -
Apr5g0414 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Apr5g0414 603 TIGRFAM PPR: pentatricopeptide repeat domain 149 179 IPR002885 -
Apr5g0414 603 TIGRFAM PPR: pentatricopeptide repeat domain 384 416 IPR002885 -
Apr5g0414 603 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Apr5g0414 603 TIGRFAM PPR: pentatricopeptide repeat domain 282 314 IPR002885 -
Apr5g0414 603 TIGRFAM PPR: pentatricopeptide repeat domain 90 117 IPR002885 -
Apr5g0414 603 TIGRFAM PPR: pentatricopeptide repeat domain 118 148 IPR002885 -
Apr5g0414 603 TIGRFAM PPR: pentatricopeptide repeat domain 219 249 IPR002885 -
Apr5g0414 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Apr5g0414 603 Pfam PPR repeat family 381 429 IPR002885 -
Apr5g0414 603 Pfam PPR repeat family 279 326 IPR002885 -
Apr5g0414 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Apr5g0414 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Apr5g0414 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 276 - -
Apr5g0414 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 146 570 - -
Apr5g0414 603 SUPERFAMILY TPR-like 95 309 IPR011990 GO:0005515
Apr5g0414 603 Gene3D Tetratricopeptide repeat domain 248 332 IPR011990 GO:0005515
Apr5g0414 603 Gene3D Tetratricopeptide repeat domain 333 509 IPR011990 GO:0005515
Apr5g0414 603 Gene3D Tetratricopeptide repeat domain 26 146 IPR011990 GO:0005515
Apr5g0414 603 Gene3D Tetratricopeptide repeat domain 147 247 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0414 Apr-Chr5 4045083 4047409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0414 122 588 Glycoside Hydrolase AT3G49170 30.297 4.59e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0414 - - lja:Lj3g3v3500060.1 856.284