Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0404 ATGGGTCGCCTTCTTCTCTTTCTCATTATTCTCAGCTTCGTTGCATTATCTTTCCTCTCAGAGGTTCAATCAGCGTCGTTCAAGATCGTGAACAAGTGTCGTTACACGATATGGCCGGGATTACTCTCCGGCGCCACCTCACCGCCGCTTCCCACCACCGGATTTGCCCTCAGAAGCGGCAAGTCAAAGACCATAAACATCCCGAAATCTTGGTCGGGTCGGATATGGGCACGGACCCTCTGCGGTCAAGACCCGGACGGAAAATTCTCTTGCGTCACCGCCGACTGCGGTTCCGGCAAAGTAGAGTGCGCCGGCGGCGCCAAGCCGCCGGCCACATTGGCGGAGTTCACTCTTAACGGAGCCGATGGATTGGACTTCTACGACGTGAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTCGCCAAGGGAGGAACCAGGGGCGGATGCAGCGCCACCGGCTGTCTCGTCGACCTTAACGGTGGCTGTCCGGCGGATCTCAAGGTGGCGCGTGTGAACGGCACCGGTCGCAGCGTCGCGTGCCGGAGCGCATGCGAGGCTTTCGGGGATCCTCGTTATTGCTGCAGTGAGGCGTTCTCCACGCCTGACACGTGTAGTCCTTCCGTGTATTCGCAGTTCTTCAAGCATGCTTGCCCACGCGCCTACAGCTACGCGTATGATGACAAGACGAGCACCTATACATGTGCCTCCGCTAACTATTTGATCATTTTCTGTCCCATGCCCTATACTAGCCAAAAACTGTTGGGAGCACGCAAAGATGGGGCACAGCTTCCTCTGGTAAATAAAACAATGATGTACTTGTCAAGCCTACAATCAGGAGGTTCTTCATCAATATCTCTGATTCAAACTCAGAGTATAGCTTATGTTGCCTCTATCACGGTGGCTTTCTTCCTGTTCTACCGTCTTTAG 933 0.5434 MGRLLLFLIILSFVALSFLSEVQSASFKIVNKCRYTIWPGLLSGATSPPLPTTGFALRSGKSKTINIPKSWSGRIWARTLCGQDPDGKFSCVTADCGSGKVECAGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGTRGGCSATGCLVDLNGGCPADLKVARVNGTGRSVACRSACEAFGDPRYCCSEAFSTPDTCSPSVYSQFFKHACPRAYSYAYDDKTSTYTCASANYLIIFCPMPYTSQKLLGARKDGAQLPLVNKTMMYLSSLQSGGSSSISLIQTQSIAYVASITVAFFLFYRL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0404 310 Pfam Thaumatin family 31 247 IPR001938 -
Apr5g0404 310 CDD TLP-PA 26 246 - -
Apr5g0404 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Apr5g0404 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Apr5g0404 310 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Apr5g0404 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Apr5g0404 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Apr5g0404 310 PANTHER OS03G0233200 PROTEIN 6 258 IPR001938 -
Apr5g0404 310 PIRSF PR5 1 303 IPR001938 -
Apr5g0404 310 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Apr5g0404 310 SMART tha2 27 247 IPR001938 -
Apr5g0404 310 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 6 258 - -
Apr5g0404 310 Gene3D Thaumatin 25 247 IPR037176 -
Apr5g0404 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Apr5g0404 310 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0404 Apr-Chr5 3954272 3956790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0404 5 262 Receptor kinase-like Gene Family AT5G38280 48.276 1.17e-85 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0404 - - gmx:100802252 540.806