Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0403 ATGGATTCCTTAACTGCCTCTTGTTTCACTCTCATTGCCCTCCTACTCCTCACTCCCGAAGGTGTTAAGGGTGCTACCTTCACGTTCGTAAACAGATGCGAATACACAGTGTGGCCGGGTATTCTTGCAAATGCGGGTAGCGCGCCACTTGACAGCACCGGCTTCGAGCTTCCCAAAGACACTTCTCGCTCCTTTCAAGCTCCCACAGGCTGGTCCGGTCGATTCTGGGGTCGAACCGGTTGCAATTTCGACGGATCAGGTTCCGGGTCTTGTCTCACCGGCGACTGTGGCTCCGGCCAGCTCGAATGCAACGGCGCTGGAGCAGCCCCTCCGGCCACGCTCGCCGAGTTCACGCTGGGCACGGGAGGGCAAGACTTCTACGACGTGAGCCTCGTCGATGGCTACAATCTGCCTCTGATCGTGGAAGGGACTGGCGGGTCGGGTCAGTGTGCGTCCACGGGTTGCACGTCGGATCTGAACCAGCAATGCCCCGCGGAACTCAAGGCCTCGGAGGGAAGCGCGTGCAAGAGCGCGTGTGAGGCTTTTGGTAGCCCCGAGTACTGCTGCAGCGGCGCGTATGGTTCACCGGCCACTTGTAGGCCCTCTATATACTCCGAGATGTTCAAGGCTGCATGCCCCAGATCGTATAGCTACGCATACGATGATGCTACGAGTACATTCACATGTACTGGTGCTGATTATACCGTTACCTTTTGCCCATCCTCTCCAAGTCAGAAATCTTCACGAGATACGAGTCCCATGACATCAACAACAACATCACAAGGGGCAGGGGCAGGGACGGGGACGGGGATGGGAACAGCAATGACAGGGACAGGGACTGGAACAGGGTCGGAAGGGGCAGTGGTATACACGGGTGCGGACACGGGCGTTGGGTATTCAGTTACGGATTCCGGTTCAAGTTCAGGATCCGGAGGAGAGACAATGCTGGCAGATGGGTCATATTTAGCTGGTTTAGCGATGGGAGACTCAGCTAGAACTGTTTCCTCCGCGTTTCTCTACTCTGTTAGCTTTTTGCTCATTGTCTGTTTGCTTTAG 1056 0.5606 MDSLTASCFTLIALLLLTPEGVKGATFTFVNRCEYTVWPGILANAGSAPLDSTGFELPKDTSRSFQAPTGWSGRFWGRTGCNFDGSGSGSCLTGDCGSGQLECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPLIVEGTGGSGQCASTGCTSDLNQQCPAELKASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDTSPMTSTTTSQGAGAGTGTGMGTAMTGTGTGTGSEGAVVYTGADTGVGYSVTDSGSSSGSGGETMLADGSYLAGLAMGDSARTVSSAFLYSVSFLLIVCLL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0403 351 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Apr5g0403 351 Pfam Thaumatin family 31 240 IPR001938 -
Apr5g0403 351 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Apr5g0403 351 MobiDBLite consensus disorder prediction 240 277 - -
Apr5g0403 351 SMART tha2 27 240 IPR001938 -
Apr5g0403 351 PANTHER OS03G0233200 PROTEIN 13 265 IPR001938 -
Apr5g0403 351 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Apr5g0403 351 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Apr5g0403 351 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Apr5g0403 351 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Apr5g0403 351 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Apr5g0403 351 CDD TLP-PA 26 239 - -
Apr5g0403 351 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Apr5g0403 351 Gene3D Thaumatin 25 240 IPR037176 -
Apr5g0403 351 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 13 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0403 Apr-Chr5 3947550 3949700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0403 9 252 Receptor kinase-like Gene Family AT5G38280 47.692 1.11e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0403 - - gmx:100801173 582.022